Hb_000213_080

Information

Type -
Description -
Location Contig213: 174841-178454
Sequence    

Annotation

kegg
ID vvi:104878862
description L-type lectin-domain containing receptor kinase IX.1-like
nr
ID XP_010648052.1
description PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
swissprot
ID Q9LXA5
description L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1
trembl
ID F6HW39
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0097g00070 PE=4 SV=1
Gene Ontology
ID GO:0005488
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_080 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
2 Hb_006280_010 0.2563112948 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
3 Hb_001277_090 0.2854358676 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
4 Hb_000043_070 0.2886544635 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
5 Hb_000077_060 0.2985218784 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
6 Hb_177179_010 0.3170327918 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
7 Hb_067769_010 0.3200354342 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_023732_040 0.3205562074 - - cytochrome P450, putative [Ricinus communis]
9 Hb_006153_080 0.3216772248 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
10 Hb_001780_120 0.3285005768 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
11 Hb_002513_030 0.3297618856 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
12 Hb_000964_060 0.3298397627 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
13 Hb_029866_030 0.3338990363 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
14 Hb_000010_100 0.337167394 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
15 Hb_055101_010 0.3414314858 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_004052_010 0.3451555685 - - PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
17 Hb_003599_070 0.3455368851 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000008_180 0.3465139295 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000276_050 0.3470305875 - - -
20 Hb_004460_010 0.3474071476 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000213_080 Hb_000213_080 Hb_006280_010 Hb_006280_010 Hb_000213_080--Hb_006280_010 Hb_001277_090 Hb_001277_090 Hb_000213_080--Hb_001277_090 Hb_000043_070 Hb_000043_070 Hb_000213_080--Hb_000043_070 Hb_000077_060 Hb_000077_060 Hb_000213_080--Hb_000077_060 Hb_177179_010 Hb_177179_010 Hb_000213_080--Hb_177179_010 Hb_067769_010 Hb_067769_010 Hb_000213_080--Hb_067769_010 Hb_004460_010 Hb_004460_010 Hb_006280_010--Hb_004460_010 Hb_001035_070 Hb_001035_070 Hb_006280_010--Hb_001035_070 Hb_002513_030 Hb_002513_030 Hb_006280_010--Hb_002513_030 Hb_006280_010--Hb_177179_010 Hb_006280_010--Hb_001277_090 Hb_000094_130 Hb_000094_130 Hb_001277_090--Hb_000094_130 Hb_000327_220 Hb_000327_220 Hb_001277_090--Hb_000327_220 Hb_000141_030 Hb_000141_030 Hb_001277_090--Hb_000141_030 Hb_006153_080 Hb_006153_080 Hb_001277_090--Hb_006153_080 Hb_011360_080 Hb_011360_080 Hb_001277_090--Hb_011360_080 Hb_004785_140 Hb_004785_140 Hb_001277_090--Hb_004785_140 Hb_000043_070--Hb_006153_080 Hb_000579_020 Hb_000579_020 Hb_000043_070--Hb_000579_020 Hb_000043_070--Hb_001277_090 Hb_002150_060 Hb_002150_060 Hb_000043_070--Hb_002150_060 Hb_005569_020 Hb_005569_020 Hb_000043_070--Hb_005569_020 Hb_001946_410 Hb_001946_410 Hb_000043_070--Hb_001946_410 Hb_000077_060--Hb_006153_080 Hb_008760_010 Hb_008760_010 Hb_000077_060--Hb_008760_010 Hb_007747_180 Hb_007747_180 Hb_000077_060--Hb_007747_180 Hb_004020_060 Hb_004020_060 Hb_000077_060--Hb_004020_060 Hb_005408_050 Hb_005408_050 Hb_000077_060--Hb_005408_050 Hb_002046_070 Hb_002046_070 Hb_000077_060--Hb_002046_070 Hb_001545_210 Hb_001545_210 Hb_177179_010--Hb_001545_210 Hb_177179_010--Hb_002513_030 Hb_001242_090 Hb_001242_090 Hb_177179_010--Hb_001242_090 Hb_003226_290 Hb_003226_290 Hb_177179_010--Hb_003226_290 Hb_004881_100 Hb_004881_100 Hb_177179_010--Hb_004881_100 Hb_002571_090 Hb_002571_090 Hb_067769_010--Hb_002571_090 Hb_000504_130 Hb_000504_130 Hb_067769_010--Hb_000504_130 Hb_000065_050 Hb_000065_050 Hb_067769_010--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_067769_010--Hb_000574_550 Hb_000205_340 Hb_000205_340 Hb_067769_010--Hb_000205_340 Hb_000296_060 Hb_000296_060 Hb_067769_010--Hb_000296_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0317887 0.0178284 0.02912 0 0.0098249 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0668888 0 0.332776 0.0767671 0.0370875

CAGE analysis