Hb_000213_100

Information

Type -
Description -
Location Contig213: 184780-187152
Sequence    

Annotation

kegg
ID rcu:RCOM_1215850
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012086185.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
swissprot
ID Q9SAJ5
description Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
trembl
ID B9SU41
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1215850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22052: 185968-186168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_100 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
2 Hb_022250_090 0.0603476412 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
3 Hb_003371_090 0.0626079152 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
4 Hb_002218_010 0.0746065482 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
5 Hb_000206_240 0.0762608663 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007532_030 0.0795892936 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
7 Hb_007508_090 0.0875609992 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
8 Hb_000230_390 0.0876903648 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
9 Hb_048219_010 0.0911619725 - - coronatine-insensitive 1 [Hevea brasiliensis]
10 Hb_004374_070 0.091658002 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
11 Hb_000041_100 0.0944901461 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
12 Hb_004052_090 0.0954610067 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
13 Hb_000172_110 0.096248587 - - -
14 Hb_001959_190 0.097311722 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
15 Hb_000270_670 0.0973425849 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
16 Hb_000107_420 0.0974418407 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
17 Hb_000866_120 0.0986093002 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
18 Hb_000866_220 0.0988405276 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
19 Hb_000189_560 0.0989956185 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
20 Hb_007441_220 0.0995779981 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]

Gene co-expression network

sample Hb_000213_100 Hb_000213_100 Hb_022250_090 Hb_022250_090 Hb_000213_100--Hb_022250_090 Hb_003371_090 Hb_003371_090 Hb_000213_100--Hb_003371_090 Hb_002218_010 Hb_002218_010 Hb_000213_100--Hb_002218_010 Hb_000206_240 Hb_000206_240 Hb_000213_100--Hb_000206_240 Hb_007532_030 Hb_007532_030 Hb_000213_100--Hb_007532_030 Hb_007508_090 Hb_007508_090 Hb_000213_100--Hb_007508_090 Hb_022250_090--Hb_000206_240 Hb_002276_130 Hb_002276_130 Hb_022250_090--Hb_002276_130 Hb_022250_090--Hb_002218_010 Hb_000230_390 Hb_000230_390 Hb_022250_090--Hb_000230_390 Hb_022250_090--Hb_003371_090 Hb_000041_100 Hb_000041_100 Hb_003371_090--Hb_000041_100 Hb_003371_090--Hb_007508_090 Hb_002450_020 Hb_002450_020 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_000297_010 Hb_000297_010 Hb_003371_090--Hb_000297_010 Hb_002218_010--Hb_007532_030 Hb_005348_140 Hb_005348_140 Hb_002218_010--Hb_005348_140 Hb_009178_030 Hb_009178_030 Hb_002218_010--Hb_009178_030 Hb_000343_130 Hb_000343_130 Hb_002218_010--Hb_000343_130 Hb_004052_090 Hb_004052_090 Hb_002218_010--Hb_004052_090 Hb_000206_240--Hb_004052_090 Hb_004846_070 Hb_004846_070 Hb_000206_240--Hb_004846_070 Hb_000107_420 Hb_000107_420 Hb_000206_240--Hb_000107_420 Hb_000258_270 Hb_000258_270 Hb_000206_240--Hb_000258_270 Hb_007483_100 Hb_007483_100 Hb_000206_240--Hb_007483_100 Hb_007532_030--Hb_009178_030 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_008725_260 Hb_008725_260 Hb_007532_030--Hb_008725_260 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560 Hb_007508_090--Hb_000230_390 Hb_007508_090--Hb_000710_060 Hb_007508_090--Hb_000189_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.78478 4.41555 0.933619 1.9914 2.00348 2.18847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59925 3.34014 5.60393 2.27385 1.99928

CAGE analysis