Hb_000213_120

Information

Type -
Description -
Location Contig213: 203894-269286
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04790g
description POPTRDRAFT_831828; ABC transporter family protein
nr
ID AIU41625.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q84M24
description ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2
trembl
ID A0A097P9N9
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCA1 PE=2 SV=1
Gene Ontology
ID GO:0005774
description abc transporter a family member 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22055: 205068-214949 , PASA_asmbl_22056: 216578-217959 , PASA_asmbl_22057: 218045-218240 , PASA_asmbl_22058: 220339-221467 , PASA_asmbl_22059: 224886-230341 , PASA_asmbl_22060: 225057-225508 , PASA_asmbl_22061: 230385-269099 , PASA_asmbl_22062: 257315-257467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_120 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_032808_030 0.0694046547 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_000925_140 0.0722730227 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
4 Hb_000369_130 0.0838260413 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
5 Hb_001123_050 0.0859163725 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000862_040 0.0912799813 - - ara4-interacting protein, putative [Ricinus communis]
7 Hb_002662_020 0.0939999884 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
8 Hb_006355_090 0.0945210972 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
9 Hb_000236_410 0.0946675989 - - Paramyosin, putative [Ricinus communis]
10 Hb_013399_070 0.0949182392 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
11 Hb_001935_140 0.095433667 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
12 Hb_001266_100 0.0962315561 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
13 Hb_000679_310 0.0980921284 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
14 Hb_000631_120 0.0988034772 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
15 Hb_000270_030 0.0990602741 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
16 Hb_001178_070 0.0991635386 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
17 Hb_003058_060 0.1010480911 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
18 Hb_001946_340 0.1014631873 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
19 Hb_001821_090 0.101684864 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
20 Hb_003498_120 0.1020891249 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000213_120 Hb_000213_120 Hb_032808_030 Hb_032808_030 Hb_000213_120--Hb_032808_030 Hb_000925_140 Hb_000925_140 Hb_000213_120--Hb_000925_140 Hb_000369_130 Hb_000369_130 Hb_000213_120--Hb_000369_130 Hb_001123_050 Hb_001123_050 Hb_000213_120--Hb_001123_050 Hb_000862_040 Hb_000862_040 Hb_000213_120--Hb_000862_040 Hb_002662_020 Hb_002662_020 Hb_000213_120--Hb_002662_020 Hb_000236_410 Hb_000236_410 Hb_032808_030--Hb_000236_410 Hb_032808_030--Hb_000925_140 Hb_032808_030--Hb_002662_020 Hb_000105_040 Hb_000105_040 Hb_032808_030--Hb_000105_040 Hb_001105_160 Hb_001105_160 Hb_032808_030--Hb_001105_160 Hb_000925_140--Hb_000236_410 Hb_000925_140--Hb_000105_040 Hb_013399_070 Hb_013399_070 Hb_000925_140--Hb_013399_070 Hb_001935_140 Hb_001935_140 Hb_000925_140--Hb_001935_140 Hb_002107_070 Hb_002107_070 Hb_000369_130--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000369_130--Hb_003058_060 Hb_006355_090 Hb_006355_090 Hb_000369_130--Hb_006355_090 Hb_001821_090 Hb_001821_090 Hb_000369_130--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_000369_130--Hb_005143_030 Hb_001621_130 Hb_001621_130 Hb_000369_130--Hb_001621_130 Hb_002477_090 Hb_002477_090 Hb_001123_050--Hb_002477_090 Hb_001123_050--Hb_000862_040 Hb_023226_080 Hb_023226_080 Hb_001123_050--Hb_023226_080 Hb_005542_140 Hb_005542_140 Hb_001123_050--Hb_005542_140 Hb_127743_010 Hb_127743_010 Hb_001123_050--Hb_127743_010 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_000862_040--Hb_005542_140 Hb_000059_020 Hb_000059_020 Hb_000862_040--Hb_000059_020 Hb_000862_040--Hb_001935_140 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_005269_040 Hb_005269_040 Hb_002662_020--Hb_005269_040 Hb_004143_040 Hb_004143_040 Hb_002662_020--Hb_004143_040 Hb_000116_410 Hb_000116_410 Hb_002662_020--Hb_000116_410 Hb_002026_210 Hb_002026_210 Hb_002662_020--Hb_002026_210 Hb_000347_180 Hb_000347_180 Hb_002662_020--Hb_000347_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09153 14.7387 4.34969 8.97826 7.86121 11.0383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.87714 8.02407 3.8737 12.401 5.99522

CAGE analysis