Hb_000214_050

Information

Type -
Description -
Location Contig214: 116632-128555
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22260g
description POPTRDRAFT_751929; hypothetical protein
nr
ID XP_012066355.1
description PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067L3C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23908 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein iq-domain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22102: 116648-128311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000214_050 0.0 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
2 Hb_002326_040 0.0500983546 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
3 Hb_002811_270 0.0502714184 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
4 Hb_003186_020 0.0558117822 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
5 Hb_000373_080 0.0584008562 - - PREDICTED: serine decarboxylase [Jatropha curcas]
6 Hb_001518_080 0.0587601685 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
7 Hb_001377_310 0.060084502 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
8 Hb_015807_050 0.061603925 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
9 Hb_000362_170 0.0619247497 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
10 Hb_053079_020 0.0642701491 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
11 Hb_132840_110 0.0645649057 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
12 Hb_000313_220 0.0668692001 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
13 Hb_001268_280 0.0677330193 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006501_090 0.0678695123 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
15 Hb_000103_340 0.0680426892 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
16 Hb_012506_030 0.0686911449 - - AP-2 complex subunit alpha, putative [Ricinus communis]
17 Hb_004586_060 0.0689458733 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
18 Hb_001005_030 0.0692514328 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
19 Hb_002205_250 0.0700860314 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
20 Hb_002849_130 0.0702023318 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000214_050 Hb_000214_050 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_002811_270 Hb_002811_270 Hb_000214_050--Hb_002811_270 Hb_003186_020 Hb_003186_020 Hb_000214_050--Hb_003186_020 Hb_000373_080 Hb_000373_080 Hb_000214_050--Hb_000373_080 Hb_001518_080 Hb_001518_080 Hb_000214_050--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310 Hb_012506_030 Hb_012506_030 Hb_002326_040--Hb_012506_030 Hb_002326_040--Hb_002811_270 Hb_002326_040--Hb_001518_080 Hb_007248_030 Hb_007248_030 Hb_002326_040--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_002326_040--Hb_023313_040 Hb_002811_270--Hb_001518_080 Hb_002811_270--Hb_012506_030 Hb_002811_270--Hb_000373_080 Hb_002811_270--Hb_003186_020 Hb_003186_020--Hb_000373_080 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_000373_080--Hb_001377_310 Hb_001005_030 Hb_001005_030 Hb_000373_080--Hb_001005_030 Hb_000362_170 Hb_000362_170 Hb_000373_080--Hb_000362_170 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6175 14.4955 17.7974 16.5583 12.6664 13.9724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.49389 8.49974 10.4105 11.5996 16.1662

CAGE analysis