Hb_000215_130

Information

Type -
Description -
Location Contig215: 102711-105976
Sequence    

Annotation

kegg
ID rcu:RCOM_1049330
description Pectinesterase PPE8B precursor, putative (EC:3.1.1.11)
nr
ID XP_012076853.1
description PREDICTED: probable pectinesterase 53 [Jatropha curcas]
swissprot
ID Q8VYZ3
description Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1
trembl
ID A0A067KCE2
description Pectinesterase OS=Jatropha curcas GN=JCGZ_07358 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22178: 102734-106053 , PASA_asmbl_22179: 103589-105884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_130 0.0 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
2 Hb_001186_120 0.06782197 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
3 Hb_001226_100 0.0891939271 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000336_280 0.0907941709 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
5 Hb_004709_030 0.1111228329 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
6 Hb_005333_210 0.1130067219 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
7 Hb_001832_110 0.1146018157 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
8 Hb_019278_010 0.1176264289 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
9 Hb_001439_040 0.1208113678 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
10 Hb_000836_260 0.1214742889 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_000087_120 0.1215712896 - - AMP dependent CoA ligase, putative [Ricinus communis]
12 Hb_002379_060 0.1223285946 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
13 Hb_000753_180 0.1236679136 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
14 Hb_000880_040 0.1254817734 - - -
15 Hb_170023_010 0.1271704021 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
16 Hb_002685_100 0.1277928565 - - low temperature inducible SLTI66 [Glycine max]
17 Hb_001300_140 0.1290682322 - - -
18 Hb_004324_320 0.1305292324 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
19 Hb_009486_120 0.1317656628 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
20 Hb_001689_070 0.1318873755 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000215_130 Hb_000215_130 Hb_001186_120 Hb_001186_120 Hb_000215_130--Hb_001186_120 Hb_001226_100 Hb_001226_100 Hb_000215_130--Hb_001226_100 Hb_000336_280 Hb_000336_280 Hb_000215_130--Hb_000336_280 Hb_004709_030 Hb_004709_030 Hb_000215_130--Hb_004709_030 Hb_005333_210 Hb_005333_210 Hb_000215_130--Hb_005333_210 Hb_001832_110 Hb_001832_110 Hb_000215_130--Hb_001832_110 Hb_001186_120--Hb_001226_100 Hb_000880_040 Hb_000880_040 Hb_001186_120--Hb_000880_040 Hb_001186_120--Hb_004709_030 Hb_009102_010 Hb_009102_010 Hb_001186_120--Hb_009102_010 Hb_001186_120--Hb_000336_280 Hb_001226_100--Hb_000336_280 Hb_001226_100--Hb_001832_110 Hb_001439_040 Hb_001439_040 Hb_001226_100--Hb_001439_040 Hb_001226_100--Hb_005333_210 Hb_000336_280--Hb_001832_110 Hb_002685_100 Hb_002685_100 Hb_000336_280--Hb_002685_100 Hb_000336_280--Hb_005333_210 Hb_002304_190 Hb_002304_190 Hb_000336_280--Hb_002304_190 Hb_000365_440 Hb_000365_440 Hb_004709_030--Hb_000365_440 Hb_019278_010 Hb_019278_010 Hb_004709_030--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_004709_030--Hb_000087_120 Hb_026419_010 Hb_026419_010 Hb_004709_030--Hb_026419_010 Hb_170023_010 Hb_170023_010 Hb_004709_030--Hb_170023_010 Hb_001300_140 Hb_001300_140 Hb_005333_210--Hb_001300_140 Hb_079394_010 Hb_079394_010 Hb_005333_210--Hb_079394_010 Hb_000753_180 Hb_000753_180 Hb_005333_210--Hb_000753_180 Hb_001004_130 Hb_001004_130 Hb_005333_210--Hb_001004_130 Hb_001832_110--Hb_002304_190 Hb_001832_110--Hb_002685_100 Hb_001832_110--Hb_001439_040 Hb_000018_120 Hb_000018_120 Hb_001832_110--Hb_000018_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.056724 2.15847 13.4529 5.54312 0.104416 0.0842921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0767021 0.0301773 0 14.8141 9.8928

CAGE analysis