Hb_000215_160

Information

Type -
Description -
Location Contig215: 135196-142892
Sequence    

Annotation

kegg
ID rcu:RCOM_1049090
description arginyl-tRNA synthetase, putative (EC:6.1.1.19)
nr
ID XP_012076843.1
description PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
swissprot
ID Q6P1S4
description Arginine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=rars PE=2 SV=1
trembl
ID A0A067KC47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07352 PE=3 SV=1
Gene Ontology
ID GO:0005737
description arginine--trna cytoplasmic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22188: 136314-136505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_160 0.0 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
2 Hb_001098_050 0.1301166779 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
3 Hb_004724_410 0.1343617939 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
4 Hb_127552_040 0.1507691294 - - Uncharacterized protein L484_000643 [Morus notabilis]
5 Hb_003292_030 0.1538769867 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
6 Hb_027792_020 0.1566002311 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
7 Hb_032876_030 0.1633769884 - - -
8 Hb_000032_280 0.1674648719 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
9 Hb_000212_460 0.1701134312 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
10 Hb_033152_020 0.1707674063 - - hypothetical protein VITISV_000649 [Vitis vinifera]
11 Hb_004800_200 0.1748378901 - - -
12 Hb_001117_170 0.1750686574 - - -
13 Hb_000742_170 0.1758095173 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_004411_060 0.1768048077 - - acetolactate synthase, putative [Ricinus communis]
15 Hb_012733_030 0.1769863031 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
16 Hb_001168_050 0.1777577678 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
17 Hb_011928_020 0.1788469368 - - something about silencing protein sas10, putative [Ricinus communis]
18 Hb_188126_010 0.1795948131 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
19 Hb_010021_010 0.1797507642 - - unnamed protein product [Coffea canephora]
20 Hb_001431_120 0.1799872189 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]

Gene co-expression network

sample Hb_000215_160 Hb_000215_160 Hb_001098_050 Hb_001098_050 Hb_000215_160--Hb_001098_050 Hb_004724_410 Hb_004724_410 Hb_000215_160--Hb_004724_410 Hb_127552_040 Hb_127552_040 Hb_000215_160--Hb_127552_040 Hb_003292_030 Hb_003292_030 Hb_000215_160--Hb_003292_030 Hb_027792_020 Hb_027792_020 Hb_000215_160--Hb_027792_020 Hb_032876_030 Hb_032876_030 Hb_000215_160--Hb_032876_030 Hb_002908_040 Hb_002908_040 Hb_001098_050--Hb_002908_040 Hb_001098_050--Hb_004724_410 Hb_000197_220 Hb_000197_220 Hb_001098_050--Hb_000197_220 Hb_001223_010 Hb_001223_010 Hb_001098_050--Hb_001223_010 Hb_000950_060 Hb_000950_060 Hb_001098_050--Hb_000950_060 Hb_000025_270 Hb_000025_270 Hb_004724_410--Hb_000025_270 Hb_001623_280 Hb_001623_280 Hb_004724_410--Hb_001623_280 Hb_001348_080 Hb_001348_080 Hb_004724_410--Hb_001348_080 Hb_003020_030 Hb_003020_030 Hb_004724_410--Hb_003020_030 Hb_188281_040 Hb_188281_040 Hb_004724_410--Hb_188281_040 Hb_004724_410--Hb_003292_030 Hb_188126_010 Hb_188126_010 Hb_127552_040--Hb_188126_010 Hb_002909_090 Hb_002909_090 Hb_127552_040--Hb_002909_090 Hb_000640_100 Hb_000640_100 Hb_127552_040--Hb_000640_100 Hb_005801_020 Hb_005801_020 Hb_127552_040--Hb_005801_020 Hb_000027_190 Hb_000027_190 Hb_127552_040--Hb_000027_190 Hb_000661_030 Hb_000661_030 Hb_127552_040--Hb_000661_030 Hb_012055_030 Hb_012055_030 Hb_003292_030--Hb_012055_030 Hb_000075_040 Hb_000075_040 Hb_003292_030--Hb_000075_040 Hb_005542_130 Hb_005542_130 Hb_003292_030--Hb_005542_130 Hb_003159_140 Hb_003159_140 Hb_003292_030--Hb_003159_140 Hb_004846_220 Hb_004846_220 Hb_003292_030--Hb_004846_220 Hb_001247_310 Hb_001247_310 Hb_003292_030--Hb_001247_310 Hb_002374_230 Hb_002374_230 Hb_027792_020--Hb_002374_230 Hb_000742_170 Hb_000742_170 Hb_027792_020--Hb_000742_170 Hb_027792_020--Hb_004724_410 Hb_000212_460 Hb_000212_460 Hb_027792_020--Hb_000212_460 Hb_027792_020--Hb_003292_030 Hb_006905_030 Hb_006905_030 Hb_032876_030--Hb_006905_030 Hb_032876_030--Hb_003292_030 Hb_001492_030 Hb_001492_030 Hb_032876_030--Hb_001492_030 Hb_032876_030--Hb_127552_040 Hb_032876_030--Hb_012055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90404 0.620011 2.14406 0.707164 1.87047 2.47052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.936612 1.17916 0.995683 5.25455 3.43357

CAGE analysis