Hb_000215_180

Information

Type -
Description -
Location Contig215: 159192-159434
Sequence    

Annotation

kegg
ID pop:POPTR_0012s11050g
description POPTRDRAFT_662252; hypothetical protein
nr
ID ADR71293.1
description hypothetical protein 17 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMQ6
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22189: 159124-159573
cDNA
(Sanger)
(ID:Location)		 009_A05.ab1: 159134-159551 , 017_G23.ab1: 159124-159539 , 022_O15.ab1: 159136-159554 , 027_K15.ab1: 159138-159540 , 027_N20.ab1: 159138-159559 , 029_E17.ab1: 159138-159540 , 031_C06.ab1: 159138-159573 , 040_F19.ab1: 159106-159539 , 049_D07.ab1: 159131-159551

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_180 0.0 - - hypothetical protein 17 [Hevea brasiliensis]
2 Hb_183086_040 0.0845742231 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
3 Hb_000922_100 0.0875069792 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
4 Hb_000780_210 0.0960967978 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
5 Hb_001377_380 0.097468977 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
6 Hb_000896_120 0.0977709404 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
7 Hb_000106_100 0.0982730128 - - -
8 Hb_009838_040 0.1061401842 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
9 Hb_152021_010 0.1089596158 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
10 Hb_001507_070 0.1109294703 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001545_060 0.117222738 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
12 Hb_000635_080 0.1201917667 - - 60S ribosomal protein L17A [Hevea brasiliensis]
13 Hb_001785_040 0.1271883755 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
14 Hb_000318_490 0.1309737146 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
15 Hb_000163_210 0.1334486381 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
16 Hb_000224_090 0.1344699009 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
17 Hb_017862_010 0.134579673 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
18 Hb_001017_070 0.1352432674 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003349_070 0.1354316156 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
20 Hb_000398_160 0.1354481065 - - GDP-mannose transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000215_180 Hb_000215_180 Hb_183086_040 Hb_183086_040 Hb_000215_180--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000215_180--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000896_120 Hb_000896_120 Hb_000215_180--Hb_000896_120 Hb_000106_100 Hb_000106_100 Hb_000215_180--Hb_000106_100 Hb_183086_040--Hb_000922_100 Hb_183086_040--Hb_000780_210 Hb_183086_040--Hb_000896_120 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_000922_100--Hb_000896_120 Hb_000329_330 Hb_000329_330 Hb_000922_100--Hb_000329_330 Hb_000722_040 Hb_000722_040 Hb_000922_100--Hb_000722_040 Hb_001545_060 Hb_001545_060 Hb_000922_100--Hb_001545_060 Hb_000780_210--Hb_001377_380 Hb_000635_080 Hb_000635_080 Hb_000780_210--Hb_000635_080 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_002316_120 Hb_002316_120 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_001377_380--Hb_000635_080 Hb_001377_380--Hb_002316_120 Hb_004545_130 Hb_004545_130 Hb_001377_380--Hb_004545_130 Hb_000789_110 Hb_000789_110 Hb_001377_380--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_001377_380--Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_003349_070 Hb_003349_070 Hb_000106_100--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_000106_100--Hb_004223_260 Hb_000106_100--Hb_000780_210 Hb_001623_430 Hb_001623_430 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
198.599 40.3301 36.4111 149.463 129.667 154.034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1193.17 1228.33 732.868 292.362 44.2998

CAGE analysis