Hb_000215_200

Information

Type -
Description -
Location Contig215: 167410-169723
Sequence    

Annotation

kegg
ID tcc:TCM_037757
description Profilin 1 isoform 1
nr
ID Q9STB6.1
description RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
swissprot
ID Q9STB6
description Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1
trembl
ID I3SDB5
description Profilin OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005737
description profilin 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22194: 167763-169843
cDNA
(Sanger)
(ID:Location)		 005_F07.ab1: 167918-169802 , 005_I17.ab1: 167846-169727 , 008_F04.ab1: 167846-169727 , 009_J05.ab1: 167864-169727 , 015_F05.ab1: 167785-169727 , 016_G16.ab1: 167855-169657 , 020_A03.ab1: 167890-169805 , 021_O01.ab1: 167818-169725 , 025_N10.ab1: 167826-169749 , 028_D07.ab1: 168082-169721 , 028_L20.ab1: 167815-169727 , 030_B09.ab1: 167869-169749 , 030_L20.ab1: 167909-169794 , 031_G04.ab1: 167824-169707 , 033_H02.ab1: 167823-169727 , 034_C22.ab1: 167890-169794 , 035_I09.ab1: 167913-169727 , 035_J08.ab1: 167890-169843 , 036_A07.ab1: 167832-169725 , 040_D21.ab1: 167961-169806 , 047_K04.ab1: 167911-169806 , 051_P10.ab1: 167864-169719 , 052_N05.ab1: 167867-167951

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_200 0.0 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
2 Hb_041205_010 0.107919984 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002284_050 0.1118979502 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
4 Hb_006995_040 0.114051422 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
5 Hb_000641_020 0.1142335284 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
6 Hb_003994_270 0.1181851564 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
7 Hb_132180_010 0.1294366191 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
8 Hb_080601_020 0.1400853501 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
9 Hb_000710_070 0.1415842232 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
10 Hb_000635_070 0.1453950815 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
11 Hb_012653_040 0.1462586129 - - UV-induced protein uvi31, putative [Ricinus communis]
12 Hb_000733_080 0.1467887025 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
13 Hb_098852_010 0.1476380799 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_000671_120 0.1481485629 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
15 Hb_182964_010 0.1515781074 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
16 Hb_000340_520 0.1535335293 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
17 Hb_001504_080 0.1540926602 - - golgi snare 11 protein, putative [Ricinus communis]
18 Hb_002078_260 0.1557796376 - - unknown [Populus trichocarpa]
19 Hb_029142_070 0.1561581637 - - -
20 Hb_002660_050 0.1578894954 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]

Gene co-expression network

sample Hb_000215_200 Hb_000215_200 Hb_041205_010 Hb_041205_010 Hb_000215_200--Hb_041205_010 Hb_002284_050 Hb_002284_050 Hb_000215_200--Hb_002284_050 Hb_006995_040 Hb_006995_040 Hb_000215_200--Hb_006995_040 Hb_000641_020 Hb_000641_020 Hb_000215_200--Hb_000641_020 Hb_003994_270 Hb_003994_270 Hb_000215_200--Hb_003994_270 Hb_132180_010 Hb_132180_010 Hb_000215_200--Hb_132180_010 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_082006_010 Hb_082006_010 Hb_041205_010--Hb_082006_010 Hb_002078_260 Hb_002078_260 Hb_041205_010--Hb_002078_260 Hb_041205_010--Hb_000641_020 Hb_001504_080 Hb_001504_080 Hb_002284_050--Hb_001504_080 Hb_000710_070 Hb_000710_070 Hb_002284_050--Hb_000710_070 Hb_080601_020 Hb_080601_020 Hb_002284_050--Hb_080601_020 Hb_002660_050 Hb_002660_050 Hb_002284_050--Hb_002660_050 Hb_172706_030 Hb_172706_030 Hb_002284_050--Hb_172706_030 Hb_182964_010 Hb_182964_010 Hb_006995_040--Hb_182964_010 Hb_000656_340 Hb_000656_340 Hb_006995_040--Hb_000656_340 Hb_006995_040--Hb_002284_050 Hb_006995_040--Hb_000710_070 Hb_014834_140 Hb_014834_140 Hb_006995_040--Hb_014834_140 Hb_000641_020--Hb_003994_270 Hb_000635_070 Hb_000635_070 Hb_000641_020--Hb_000635_070 Hb_029142_070 Hb_029142_070 Hb_000641_020--Hb_029142_070 Hb_000641_020--Hb_000710_070 Hb_001377_180 Hb_001377_180 Hb_003994_270--Hb_001377_180 Hb_000155_180 Hb_000155_180 Hb_003994_270--Hb_000155_180 Hb_012653_040 Hb_012653_040 Hb_003994_270--Hb_012653_040 Hb_000771_100 Hb_000771_100 Hb_003994_270--Hb_000771_100 Hb_132180_010--Hb_002078_260 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_132180_010--Hb_000635_070 Hb_001220_010 Hb_001220_010 Hb_132180_010--Hb_001220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
331.731 147.043 144.82 1786.29 294.762 1406.91
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1675.77 1050.06 770.14 402.521 175.694

CAGE analysis