Hb_000215_250

Information

Type -
Description -
Location Contig215: 189808-198118
Sequence    

Annotation

kegg
ID rcu:RCOM_1048880
description Acid phosphatase 1 precursor, putative (EC:3.1.3.2)
nr
ID XP_002514195.1
description Acid phosphatase 1 precursor, putative [Ricinus communis]
swissprot
ID P27061
description Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
trembl
ID B9RKF1
description Acid phosphatase 1, putative OS=Ricinus communis GN=RCOM_1048880 PE=4 SV=1
Gene Ontology
ID GO:0003993
description acid phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22199: 189809-198102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_250 0.0 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
2 Hb_002420_010 0.1097808833 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_002811_020 0.1206189983 - - Cysteine synthase [Morus notabilis]
4 Hb_013848_030 0.1225157024 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
5 Hb_003092_050 0.1245735159 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
6 Hb_001493_020 0.1262696482 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
7 Hb_082683_010 0.1281101542 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
8 Hb_007943_020 0.1313924889 - - transcription factor, putative [Ricinus communis]
9 Hb_002003_040 0.1316411238 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
10 Hb_003085_080 0.1325508646 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_188281_050 0.1414954849 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
12 Hb_000155_040 0.1418282831 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_015306_010 0.1420345112 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
14 Hb_009659_040 0.145798071 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
15 Hb_009193_060 0.1464916914 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
16 Hb_000139_510 0.147735412 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
17 Hb_000793_040 0.14934371 - - PREDICTED: transcription factor LHW [Jatropha curcas]
18 Hb_001268_300 0.1496795736 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003640_010 0.1503507463 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_003106_110 0.1512573857 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000215_250 Hb_000215_250 Hb_002420_010 Hb_002420_010 Hb_000215_250--Hb_002420_010 Hb_002811_020 Hb_002811_020 Hb_000215_250--Hb_002811_020 Hb_013848_030 Hb_013848_030 Hb_000215_250--Hb_013848_030 Hb_003092_050 Hb_003092_050 Hb_000215_250--Hb_003092_050 Hb_001493_020 Hb_001493_020 Hb_000215_250--Hb_001493_020 Hb_082683_010 Hb_082683_010 Hb_000215_250--Hb_082683_010 Hb_002003_040 Hb_002003_040 Hb_002420_010--Hb_002003_040 Hb_002420_010--Hb_082683_010 Hb_007943_020 Hb_007943_020 Hb_002420_010--Hb_007943_020 Hb_000264_340 Hb_000264_340 Hb_002420_010--Hb_000264_340 Hb_000793_040 Hb_000793_040 Hb_002420_010--Hb_000793_040 Hb_003842_010 Hb_003842_010 Hb_002811_020--Hb_003842_010 Hb_005523_050 Hb_005523_050 Hb_002811_020--Hb_005523_050 Hb_011537_020 Hb_011537_020 Hb_002811_020--Hb_011537_020 Hb_001018_080 Hb_001018_080 Hb_002811_020--Hb_001018_080 Hb_003085_080 Hb_003085_080 Hb_002811_020--Hb_003085_080 Hb_003640_010 Hb_003640_010 Hb_013848_030--Hb_003640_010 Hb_188281_050 Hb_188281_050 Hb_013848_030--Hb_188281_050 Hb_001189_100 Hb_001189_100 Hb_013848_030--Hb_001189_100 Hb_013848_030--Hb_003085_080 Hb_013848_030--Hb_002811_020 Hb_001894_010 Hb_001894_010 Hb_003092_050--Hb_001894_010 Hb_000107_550 Hb_000107_550 Hb_003092_050--Hb_000107_550 Hb_000139_510 Hb_000139_510 Hb_003092_050--Hb_000139_510 Hb_005181_060 Hb_005181_060 Hb_003092_050--Hb_005181_060 Hb_003092_050--Hb_013848_030 Hb_029977_010 Hb_029977_010 Hb_001493_020--Hb_029977_010 Hb_001493_020--Hb_000793_040 Hb_000317_220 Hb_000317_220 Hb_001493_020--Hb_000317_220 Hb_001493_020--Hb_188281_050 Hb_020378_010 Hb_020378_010 Hb_001493_020--Hb_020378_010 Hb_001268_300 Hb_001268_300 Hb_082683_010--Hb_001268_300 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_082683_010--Hb_002003_040 Hb_001677_230 Hb_001677_230 Hb_082683_010--Hb_001677_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32229 26.8244 14.6199 32.3454 2.26825 2.19704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.482528 0.084331 0.38687 58.2272 35.163

CAGE analysis