Hb_000215_290

Information

Type transcription factor
Description TF Family: NAC
Location Contig215: 222539-228744
Sequence    

Annotation

kegg
ID tcc:TCM_037747
description NAC domain containing protein 75 isoform 1
nr
ID XP_012076832.1
description PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
swissprot
ID O49459
description NAC domain-containing protein 73 OS=Arabidopsis thaliana GN=NAC073 PE=2 SV=1
trembl
ID R4NHT4
description NAC transcription factor 094 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 62-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22205: 223149-226159 , PASA_asmbl_22206: 227517-227664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_290 0.0 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
2 Hb_001706_020 0.0695559073 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
3 Hb_144703_010 0.0943025914 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
4 Hb_000025_590 0.0952884285 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
5 Hb_143629_200 0.0953149519 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
6 Hb_001174_030 0.0965744301 - - unnamed protein product [Vitis vinifera]
7 Hb_005488_030 0.0972221362 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
8 Hb_001951_230 0.0978062059 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
9 Hb_000472_020 0.1004579931 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
10 Hb_000427_040 0.1016065152 - - Gibberellin receptor GID1, putative [Ricinus communis]
11 Hb_002902_070 0.1066821027 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
12 Hb_019496_040 0.1085926318 - - kinase family protein [Populus trichocarpa]
13 Hb_000069_540 0.1101235993 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
14 Hb_000363_250 0.1109719717 - - PREDICTED: pirin-like protein [Malus domestica]
15 Hb_032779_010 0.1120710652 - - unnamed protein product [Vitis vinifera]
16 Hb_000868_130 0.1150692044 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
17 Hb_001153_090 0.1170320297 - - PREDICTED: protein FAM63A [Jatropha curcas]
18 Hb_006970_170 0.1178782464 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_000010_370 0.1179564484 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
20 Hb_000834_100 0.1179709063 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]

Gene co-expression network

sample Hb_000215_290 Hb_000215_290 Hb_001706_020 Hb_001706_020 Hb_000215_290--Hb_001706_020 Hb_144703_010 Hb_144703_010 Hb_000215_290--Hb_144703_010 Hb_000025_590 Hb_000025_590 Hb_000215_290--Hb_000025_590 Hb_143629_200 Hb_143629_200 Hb_000215_290--Hb_143629_200 Hb_001174_030 Hb_001174_030 Hb_000215_290--Hb_001174_030 Hb_005488_030 Hb_005488_030 Hb_000215_290--Hb_005488_030 Hb_001706_020--Hb_001174_030 Hb_001706_020--Hb_005488_030 Hb_001706_020--Hb_143629_200 Hb_001544_070 Hb_001544_070 Hb_001706_020--Hb_001544_070 Hb_000472_020 Hb_000472_020 Hb_001706_020--Hb_000472_020 Hb_000069_540 Hb_000069_540 Hb_144703_010--Hb_000069_540 Hb_019496_040 Hb_019496_040 Hb_144703_010--Hb_019496_040 Hb_008598_010 Hb_008598_010 Hb_144703_010--Hb_008598_010 Hb_144703_010--Hb_000472_020 Hb_002902_040 Hb_002902_040 Hb_144703_010--Hb_002902_040 Hb_000342_020 Hb_000342_020 Hb_144703_010--Hb_000342_020 Hb_000010_370 Hb_000010_370 Hb_000025_590--Hb_000010_370 Hb_032695_010 Hb_032695_010 Hb_000025_590--Hb_032695_010 Hb_002871_110 Hb_002871_110 Hb_000025_590--Hb_002871_110 Hb_006970_170 Hb_006970_170 Hb_000025_590--Hb_006970_170 Hb_032779_010 Hb_032779_010 Hb_000025_590--Hb_032779_010 Hb_002010_070 Hb_002010_070 Hb_143629_200--Hb_002010_070 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_000959_010 Hb_000959_010 Hb_143629_200--Hb_000959_010 Hb_001174_030--Hb_001544_070 Hb_005034_010 Hb_005034_010 Hb_001174_030--Hb_005034_010 Hb_174101_010 Hb_174101_010 Hb_001174_030--Hb_174101_010 Hb_001174_030--Hb_000472_020 Hb_003562_040 Hb_003562_040 Hb_001174_030--Hb_003562_040 Hb_001956_080 Hb_001956_080 Hb_005488_030--Hb_001956_080 Hb_007747_100 Hb_007747_100 Hb_005488_030--Hb_007747_100 Hb_001153_090 Hb_001153_090 Hb_005488_030--Hb_001153_090 Hb_023344_130 Hb_023344_130 Hb_005488_030--Hb_023344_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210844 4.0864 2.68912 3.9595 0.0159296 0.00744102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0579636 0.0304065 0.0289313 1.95126 4.99924

CAGE analysis