Hb_000215_340

Information

Type -
Description -
Location Contig215: 258446-267819
Sequence    

Annotation

kegg
ID rcu:RCOM_1048800
description gamma glutamyl transpeptidases, putative (EC:2.3.2.2)
nr
ID XP_002514187.1
description gamma glutamyl transpeptidases, putative [Ricinus communis]
swissprot
ID Q9M0G0
description Gamma-glutamyltranspeptidase 3 OS=Arabidopsis thaliana GN=GGT3 PE=2 SV=1
trembl
ID B9RKE3
description Gamma glutamyl transpeptidases, putative OS=Ricinus communis GN=RCOM_1048800 PE=4 SV=1
Gene Ontology
ID GO:0003840
description gamma-glutamyltranspeptidase 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22211: 258516-259130 , PASA_asmbl_22212: 259411-266350 , PASA_asmbl_22213: 264837-265004 , PASA_asmbl_22214: 266423-267579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_340 0.0 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
2 Hb_011214_140 0.1756634835 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_000685_060 0.1781617626 - - ring finger protein, putative [Ricinus communis]
4 Hb_051100_010 0.1893772137 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
5 Hb_003299_010 0.1895117974 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
6 Hb_001009_110 0.1899236184 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
7 Hb_005736_070 0.1954697 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
8 Hb_004195_190 0.1971689777 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_164010_090 0.1983541147 - - cellulose synthase, putative [Ricinus communis]
10 Hb_011909_030 0.2013144286 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
11 Hb_017417_030 0.2017113104 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
12 Hb_000088_160 0.2040489685 - - PREDICTED: uncharacterized protein LOC105629775 [Jatropha curcas]
13 Hb_000141_220 0.204327331 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
14 Hb_004195_170 0.2056417056 - - ATP binding protein, putative [Ricinus communis]
15 Hb_007618_010 0.2071410112 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
16 Hb_133636_010 0.208478714 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
17 Hb_000521_300 0.2103893016 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
18 Hb_002609_150 0.2112464713 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
19 Hb_000030_260 0.2129831936 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
20 Hb_002660_100 0.2138444934 - - plasma membrane intrinsic protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000215_340 Hb_000215_340 Hb_011214_140 Hb_011214_140 Hb_000215_340--Hb_011214_140 Hb_000685_060 Hb_000685_060 Hb_000215_340--Hb_000685_060 Hb_051100_010 Hb_051100_010 Hb_000215_340--Hb_051100_010 Hb_003299_010 Hb_003299_010 Hb_000215_340--Hb_003299_010 Hb_001009_110 Hb_001009_110 Hb_000215_340--Hb_001009_110 Hb_005736_070 Hb_005736_070 Hb_000215_340--Hb_005736_070 Hb_011214_140--Hb_001009_110 Hb_000030_260 Hb_000030_260 Hb_011214_140--Hb_000030_260 Hb_000343_260 Hb_000343_260 Hb_011214_140--Hb_000343_260 Hb_000521_300 Hb_000521_300 Hb_011214_140--Hb_000521_300 Hb_000086_370 Hb_000086_370 Hb_011214_140--Hb_000086_370 Hb_006501_170 Hb_006501_170 Hb_011214_140--Hb_006501_170 Hb_003504_040 Hb_003504_040 Hb_000685_060--Hb_003504_040 Hb_000685_060--Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_000685_060--Hb_005157_010 Hb_001377_500 Hb_001377_500 Hb_000685_060--Hb_001377_500 Hb_000608_020 Hb_000608_020 Hb_000685_060--Hb_000608_020 Hb_135811_060 Hb_135811_060 Hb_051100_010--Hb_135811_060 Hb_000521_210 Hb_000521_210 Hb_051100_010--Hb_000521_210 Hb_005380_030 Hb_005380_030 Hb_051100_010--Hb_005380_030 Hb_015473_010 Hb_015473_010 Hb_051100_010--Hb_015473_010 Hb_000856_240 Hb_000856_240 Hb_051100_010--Hb_000856_240 Hb_000172_010 Hb_000172_010 Hb_051100_010--Hb_000172_010 Hb_003299_010--Hb_005157_010 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_003299_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_003299_010--Hb_133636_010 Hb_002219_090 Hb_002219_090 Hb_001009_110--Hb_002219_090 Hb_149056_010 Hb_149056_010 Hb_001009_110--Hb_149056_010 Hb_000333_130 Hb_000333_130 Hb_001009_110--Hb_000333_130 Hb_118777_010 Hb_118777_010 Hb_001009_110--Hb_118777_010 Hb_009778_030 Hb_009778_030 Hb_001009_110--Hb_009778_030 Hb_005736_070--Hb_011214_140 Hb_005736_070--Hb_001009_110 Hb_005736_070--Hb_006501_170 Hb_008948_080 Hb_008948_080 Hb_005736_070--Hb_008948_080 Hb_001825_020 Hb_001825_020 Hb_005736_070--Hb_001825_020 Hb_010620_020 Hb_010620_020 Hb_005736_070--Hb_010620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69362 52.3034 1.32099 9.07196 0.282849 2.85655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0431273 0.0339344 5.28244 33.4282 2.58482

CAGE analysis