Hb_000215_350

Information

Type -
Description -
Location Contig215: 260494-261554
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_010687126.1
description PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A0A0A9HRG5
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_350 0.0 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
2 Hb_002572_050 0.1182287311 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
3 Hb_000318_480 0.1330912096 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
4 Hb_005496_180 0.1331178302 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
5 Hb_003411_030 0.1522912867 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
6 Hb_000953_050 0.1611010001 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
7 Hb_000056_170 0.1612262551 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000111_180 0.1718726305 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
9 Hb_004774_020 0.1752082157 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
10 Hb_001369_570 0.1789087842 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
11 Hb_001439_230 0.1799076563 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
12 Hb_002097_200 0.1802867908 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_003120_050 0.1842293412 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
14 Hb_003605_240 0.1842672296 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
15 Hb_000809_090 0.1852784357 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
16 Hb_002007_200 0.1861851551 - - -
17 Hb_011512_120 0.1861904975 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
18 Hb_101733_040 0.188413042 - - cytochrome P450 CYP71B63v2 [Populus trichocarpa]
19 Hb_002053_130 0.1891508975 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
20 Hb_088753_010 0.1908085928 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]

Gene co-expression network

sample Hb_000215_350 Hb_000215_350 Hb_002572_050 Hb_002572_050 Hb_000215_350--Hb_002572_050 Hb_000318_480 Hb_000318_480 Hb_000215_350--Hb_000318_480 Hb_005496_180 Hb_005496_180 Hb_000215_350--Hb_005496_180 Hb_003411_030 Hb_003411_030 Hb_000215_350--Hb_003411_030 Hb_000953_050 Hb_000953_050 Hb_000215_350--Hb_000953_050 Hb_000056_170 Hb_000056_170 Hb_000215_350--Hb_000056_170 Hb_002572_050--Hb_000953_050 Hb_002572_050--Hb_005496_180 Hb_001369_570 Hb_001369_570 Hb_002572_050--Hb_001369_570 Hb_001794_060 Hb_001794_060 Hb_002572_050--Hb_001794_060 Hb_008511_100 Hb_008511_100 Hb_002572_050--Hb_008511_100 Hb_000111_180 Hb_000111_180 Hb_000318_480--Hb_000111_180 Hb_014068_050 Hb_014068_050 Hb_000318_480--Hb_014068_050 Hb_002301_170 Hb_002301_170 Hb_000318_480--Hb_002301_170 Hb_052764_030 Hb_052764_030 Hb_000318_480--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_000318_480--Hb_009486_160 Hb_005496_180--Hb_000953_050 Hb_000805_230 Hb_000805_230 Hb_005496_180--Hb_000805_230 Hb_000120_160 Hb_000120_160 Hb_005496_180--Hb_000120_160 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_002915_070 Hb_002915_070 Hb_005496_180--Hb_002915_070 Hb_004774_020 Hb_004774_020 Hb_003411_030--Hb_004774_020 Hb_003925_040 Hb_003925_040 Hb_003411_030--Hb_003925_040 Hb_004108_240 Hb_004108_240 Hb_003411_030--Hb_004108_240 Hb_003411_030--Hb_000953_050 Hb_011631_010 Hb_011631_010 Hb_003411_030--Hb_011631_010 Hb_001437_010 Hb_001437_010 Hb_003411_030--Hb_001437_010 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_006909_060 Hb_006909_060 Hb_000056_170--Hb_006909_060 Hb_000056_170--Hb_003411_030 Hb_000056_170--Hb_002572_050 Hb_000258_380 Hb_000258_380 Hb_000056_170--Hb_000258_380 Hb_000056_170--Hb_000953_050 Hb_000210_010 Hb_000210_010 Hb_000056_170--Hb_000210_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173779 1.37723 0.36977 0.247016 0.169036 0.212038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0482142 0.68259 0.27992 0.259006 0.233389

CAGE analysis