Hb_000215_380

Information

Type -
Description -
Location Contig215: 321828-322451
Sequence    

Annotation

kegg
ID rcu:RCOM_1096970
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.10.2)
nr
ID XP_012091449.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
swissprot
ID Q9SY95
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g61550 OS=Arabidopsis thaliana GN=At1g61550 PE=2 SV=1
trembl
ID A0A067JDL7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21324 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus-specific glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_380 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
2 Hb_007328_020 0.0013628534 - - -
3 Hb_000563_370 0.0021596868 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
4 Hb_044724_020 0.0111257775 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
5 Hb_106595_010 0.0229689075 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
6 Hb_007264_050 0.0287739355 - - -
7 Hb_064583_010 0.0292905333 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
8 Hb_128894_010 0.0382189565 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_099085_010 0.0444877786 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_034558_010 0.0538912112 - - -
11 Hb_001766_090 0.0754261302 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
12 Hb_030312_060 0.0799318469 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
13 Hb_005050_010 0.0891280177 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
14 Hb_007658_030 0.0920628609 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
15 Hb_001796_010 0.0944943805 - - purine transporter, putative [Ricinus communis]
16 Hb_030593_010 0.0960267731 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
17 Hb_000016_290 0.0990644214 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_000484_050 0.0992217994 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
19 Hb_000979_270 0.1039741394 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
20 Hb_018609_010 0.1072336349 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000215_380 Hb_000215_380 Hb_007328_020 Hb_007328_020 Hb_000215_380--Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_000215_380--Hb_000563_370 Hb_044724_020 Hb_044724_020 Hb_000215_380--Hb_044724_020 Hb_106595_010 Hb_106595_010 Hb_000215_380--Hb_106595_010 Hb_007264_050 Hb_007264_050 Hb_000215_380--Hb_007264_050 Hb_064583_010 Hb_064583_010 Hb_000215_380--Hb_064583_010 Hb_007328_020--Hb_000563_370 Hb_007328_020--Hb_044724_020 Hb_007328_020--Hb_106595_010 Hb_007328_020--Hb_064583_010 Hb_007328_020--Hb_007264_050 Hb_000563_370--Hb_044724_020 Hb_000563_370--Hb_106595_010 Hb_000563_370--Hb_064583_010 Hb_000563_370--Hb_007264_050 Hb_044724_020--Hb_106595_010 Hb_128894_010 Hb_128894_010 Hb_044724_020--Hb_128894_010 Hb_044724_020--Hb_007264_050 Hb_106595_010--Hb_128894_010 Hb_034558_010 Hb_034558_010 Hb_106595_010--Hb_034558_010 Hb_007264_050--Hb_106595_010 Hb_007264_050--Hb_064583_010 Hb_099085_010 Hb_099085_010 Hb_064583_010--Hb_099085_010 Hb_064583_010--Hb_044724_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.05431 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0306497 0

CAGE analysis