Hb_000215_410

Information

Type transcription factor
Description TF Family: C3H
Location Contig215: 351581-352744
Sequence    

Annotation

kegg
ID tcc:TCM_037730
description Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
nr
ID XP_012076821.1
description PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
swissprot
ID Q9M0G2
description Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1
trembl
ID A0A067KPP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07335 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22218: 351532-353253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_410 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
2 Hb_002273_050 0.1132030514 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
3 Hb_129204_060 0.1167512881 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
4 Hb_002273_080 0.1244593363 - - geranylgeranyl reductase [Monoraphidium neglectum]
5 Hb_002235_240 0.1353019552 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
6 Hb_000836_120 0.1384527333 - - syntaxin, putative [Ricinus communis]
7 Hb_001269_690 0.167837291 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005656_140 0.1711833557 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
9 Hb_000140_410 0.1773466657 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
10 Hb_002686_280 0.1777257665 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_003623_070 0.1893864834 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000567_080 0.1899061609 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
13 Hb_000390_100 0.1906652792 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
14 Hb_000261_190 0.19304809 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
15 Hb_000853_030 0.1938887135 - - sucrose synthase 2 [Hevea brasiliensis]
16 Hb_008066_070 0.1965178181 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_002609_090 0.201416471 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_003849_260 0.2016692075 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
19 Hb_000976_290 0.2019133631 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
20 Hb_011930_070 0.202368353 - - PREDICTED: probable AMP deaminase [Jatropha curcas]

Gene co-expression network

sample Hb_000215_410 Hb_000215_410 Hb_002273_050 Hb_002273_050 Hb_000215_410--Hb_002273_050 Hb_129204_060 Hb_129204_060 Hb_000215_410--Hb_129204_060 Hb_002273_080 Hb_002273_080 Hb_000215_410--Hb_002273_080 Hb_002235_240 Hb_002235_240 Hb_000215_410--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_000215_410--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_000215_410--Hb_001269_690 Hb_002273_050--Hb_002273_080 Hb_002273_050--Hb_000836_120 Hb_002273_050--Hb_001269_690 Hb_002686_280 Hb_002686_280 Hb_002273_050--Hb_002686_280 Hb_002273_050--Hb_129204_060 Hb_129204_060--Hb_002235_240 Hb_129204_060--Hb_000836_120 Hb_005656_140 Hb_005656_140 Hb_129204_060--Hb_005656_140 Hb_129204_060--Hb_002686_280 Hb_002273_080--Hb_002686_280 Hb_002273_080--Hb_129204_060 Hb_002273_080--Hb_001269_690 Hb_001269_040 Hb_001269_040 Hb_002273_080--Hb_001269_040 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_001141_360 Hb_001141_360 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_000836_120--Hb_003849_260 Hb_001638_040 Hb_001638_040 Hb_000836_120--Hb_001638_040 Hb_000140_410 Hb_000140_410 Hb_001269_690--Hb_000140_410 Hb_000200_280 Hb_000200_280 Hb_001269_690--Hb_000200_280 Hb_001529_050 Hb_001529_050 Hb_001269_690--Hb_001529_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_001104_240 Hb_001104_240 Hb_001269_690--Hb_001104_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.238 445.994 10.2151 34.121 82.0202 53.119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.3885 42.8655 79.0612 194.435 6.63334

CAGE analysis