Hb_000216_010

Information

Type -
Description -
Location Contig216: 17590-25281
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_047018577.1
description carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
swissprot
ID -
description -
trembl
ID X1DJQ5
description Marine sediment metagenome DNA, contig: S01H4_S17078 (Fragment) OS=marine sediment metagenome GN=S01H4_55734 PE=4 SV=1
Gene Ontology
ID GO:0016491
description indole-3-acetaldehyde oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000216_010 0.0 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
2 Hb_006503_010 0.1113630489 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_143629_030 0.16289943 - - hypothetical protein JCGZ_23143 [Jatropha curcas]
4 Hb_009775_040 0.2083398834 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
5 Hb_002571_040 0.2375009802 - - hypothetical protein RCOM_1321060 [Ricinus communis]
6 Hb_139569_010 0.2459049262 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
7 Hb_001470_070 0.2554146562 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_002918_130 0.2604881956 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
9 Hb_000359_320 0.2669193669 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
10 Hb_002675_200 0.2773406126 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
11 Hb_001016_020 0.2796019434 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000813_150 0.2841877916 - - -
13 Hb_002211_040 0.2859945031 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
14 Hb_000000_280 0.2942428398 - - conserved hypothetical protein [Ricinus communis]
15 Hb_018563_020 0.295956127 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
16 Hb_007849_010 0.2977077513 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
17 Hb_000772_060 0.3048033308 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002301_200 0.3087825764 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
19 Hb_007145_010 0.3113431623 - - ammonium transporter 3.1-like protein [Camellia sinensis]
20 Hb_000172_050 0.3140018503 - - PREDICTED: uncharacterized protein LOC105650611 [Jatropha curcas]

Gene co-expression network

sample Hb_000216_010 Hb_000216_010 Hb_006503_010 Hb_006503_010 Hb_000216_010--Hb_006503_010 Hb_143629_030 Hb_143629_030 Hb_000216_010--Hb_143629_030 Hb_009775_040 Hb_009775_040 Hb_000216_010--Hb_009775_040 Hb_002571_040 Hb_002571_040 Hb_000216_010--Hb_002571_040 Hb_139569_010 Hb_139569_010 Hb_000216_010--Hb_139569_010 Hb_001470_070 Hb_001470_070 Hb_000216_010--Hb_001470_070 Hb_006503_010--Hb_009775_040 Hb_006503_010--Hb_143629_030 Hb_006503_010--Hb_001470_070 Hb_002918_130 Hb_002918_130 Hb_006503_010--Hb_002918_130 Hb_002675_200 Hb_002675_200 Hb_006503_010--Hb_002675_200 Hb_002301_200 Hb_002301_200 Hb_143629_030--Hb_002301_200 Hb_143629_030--Hb_009775_040 Hb_002211_040 Hb_002211_040 Hb_143629_030--Hb_002211_040 Hb_002401_010 Hb_002401_010 Hb_143629_030--Hb_002401_010 Hb_006120_170 Hb_006120_170 Hb_009775_040--Hb_006120_170 Hb_000359_320 Hb_000359_320 Hb_009775_040--Hb_000359_320 Hb_004235_060 Hb_004235_060 Hb_009775_040--Hb_004235_060 Hb_005965_020 Hb_005965_020 Hb_002571_040--Hb_005965_020 Hb_000772_060 Hb_000772_060 Hb_002571_040--Hb_000772_060 Hb_002571_040--Hb_002918_130 Hb_011099_010 Hb_011099_010 Hb_002571_040--Hb_011099_010 Hb_002571_040--Hb_006503_010 Hb_004453_190 Hb_004453_190 Hb_139569_010--Hb_004453_190 Hb_001369_290 Hb_001369_290 Hb_139569_010--Hb_001369_290 Hb_026186_010 Hb_026186_010 Hb_139569_010--Hb_026186_010 Hb_088117_010 Hb_088117_010 Hb_139569_010--Hb_088117_010 Hb_001016_020 Hb_001016_020 Hb_139569_010--Hb_001016_020 Hb_001470_070--Hb_002675_200 Hb_007145_010 Hb_007145_010 Hb_001470_070--Hb_007145_010 Hb_005144_190 Hb_005144_190 Hb_001470_070--Hb_005144_190 Hb_001322_030 Hb_001322_030 Hb_001470_070--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001470_070--Hb_034904_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0169473 0.00447887 0.0086821 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0107995 0 0.00428208 0

CAGE analysis