Hb_000217_030

Information

Type -
Description -
Location Contig217: 67787-80038
Sequence    

Annotation

kegg
ID tcc:TCM_044228
description Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1
nr
ID XP_007010430.1
description Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
swissprot
ID Q99LX5
description Multiple myeloma tumor-associated protein 2 homolog OS=Mus musculus GN=Mmtag2 PE=2 SV=1
trembl
ID A0A061FPM6
description Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 OS=Theobroma cacao GN=TCM_044228 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22400: 67775-80042 , PASA_asmbl_22401: 68402-68535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000217_030 0.0 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
2 Hb_003787_010 0.0536740703 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
3 Hb_004116_190 0.0664702392 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
4 Hb_002995_020 0.0692386574 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
5 Hb_001691_140 0.0710679019 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
6 Hb_002518_080 0.0718312459 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
7 Hb_022425_040 0.0737920442 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
8 Hb_000815_060 0.0740817335 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
9 Hb_015279_010 0.0745884939 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_000920_110 0.0770064677 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
11 Hb_000020_060 0.0779474548 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
12 Hb_029388_020 0.0782433296 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004767_080 0.0784813554 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
14 Hb_002893_050 0.0789245255 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
15 Hb_002534_150 0.0790974371 - - catalytic, putative [Ricinus communis]
16 Hb_001863_430 0.0792625451 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
17 Hb_005846_040 0.0792923259 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
18 Hb_000656_240 0.0799473613 - - proteasome subunit alpha type, putative [Ricinus communis]
19 Hb_000152_500 0.080599182 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
20 Hb_001504_110 0.0811272352 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]

Gene co-expression network

sample Hb_000217_030 Hb_000217_030 Hb_003787_010 Hb_003787_010 Hb_000217_030--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_000217_030--Hb_004116_190 Hb_002995_020 Hb_002995_020 Hb_000217_030--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_000217_030--Hb_001691_140 Hb_002518_080 Hb_002518_080 Hb_000217_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_000217_030--Hb_022425_040 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_004116_190--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_004116_190--Hb_000656_240 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_004116_190--Hb_005846_040 Hb_002995_020--Hb_000020_060 Hb_002995_020--Hb_001633_050 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130 Hb_000099_150 Hb_000099_150 Hb_001691_140--Hb_000099_150 Hb_002078_140 Hb_002078_140 Hb_001691_140--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_001863_430 Hb_001863_430 Hb_001691_140--Hb_001863_430 Hb_029388_020 Hb_029388_020 Hb_001691_140--Hb_029388_020 Hb_002518_080--Hb_022425_040 Hb_000127_180 Hb_000127_180 Hb_002518_080--Hb_000127_180 Hb_002518_080--Hb_015279_010 Hb_114893_030 Hb_114893_030 Hb_002518_080--Hb_114893_030 Hb_001504_110 Hb_001504_110 Hb_002518_080--Hb_001504_110 Hb_000815_060 Hb_000815_060 Hb_022425_040--Hb_000815_060 Hb_022425_040--Hb_015279_010 Hb_022425_040--Hb_000127_180 Hb_001832_060 Hb_001832_060 Hb_022425_040--Hb_001832_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.3713 27.5766 32.4476 34.5767 30.5928 28.6774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.4066 91.3811 39.8778 41.0853 23.3809

CAGE analysis