Hb_000217_050

Information

Type -
Description -
Location Contig217: 189663-191014
Sequence    

Annotation

kegg
ID rcu:RCOM_1101130
description elongation factor 1-alpha, putative (EC:2.7.7.4)
nr
ID XP_002528028.1
description elongation factor 1-alpha, putative [Ricinus communis]
swissprot
ID O49169
description Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1
trembl
ID B9SPV9
description Elongation factor 1-alpha OS=Ricinus communis GN=RCOM_1101130 PE=3 SV=1
Gene Ontology
ID GO:0000166
description elongation factor 1-alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000217_050 0.0 - - elongation factor 1-alpha, putative [Ricinus communis]
2 Hb_094647_010 0.2560611351 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
3 Hb_065395_010 0.2625192795 - - hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
4 Hb_087762_010 0.2778388735 - - thioredoxin-like family protein [Hevea brasiliensis]
5 Hb_000939_010 0.2795469324 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
6 Hb_000270_500 0.2807165159 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
7 Hb_000193_150 0.2845069302 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
8 Hb_000028_160 0.288737108 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
9 Hb_000347_500 0.2910056543 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
10 Hb_114261_010 0.2917233291 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
11 Hb_004738_050 0.2921517298 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
12 Hb_000307_250 0.2962235834 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
13 Hb_007021_030 0.2992030135 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007765_010 0.3014546089 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000414_030 0.3016632431 - - -
16 Hb_006723_020 0.3053404678 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
17 Hb_000742_210 0.308271604 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_001396_150 0.3117160711 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
19 Hb_000415_060 0.3130108537 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
20 Hb_007508_040 0.3161779657 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000217_050 Hb_000217_050 Hb_094647_010 Hb_094647_010 Hb_000217_050--Hb_094647_010 Hb_065395_010 Hb_065395_010 Hb_000217_050--Hb_065395_010 Hb_087762_010 Hb_087762_010 Hb_000217_050--Hb_087762_010 Hb_000939_010 Hb_000939_010 Hb_000217_050--Hb_000939_010 Hb_000270_500 Hb_000270_500 Hb_000217_050--Hb_000270_500 Hb_000193_150 Hb_000193_150 Hb_000217_050--Hb_000193_150 Hb_094647_010--Hb_000270_500 Hb_009486_010 Hb_009486_010 Hb_094647_010--Hb_009486_010 Hb_001575_040 Hb_001575_040 Hb_094647_010--Hb_001575_040 Hb_000414_030 Hb_000414_030 Hb_094647_010--Hb_000414_030 Hb_006455_080 Hb_006455_080 Hb_094647_010--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_094647_010--Hb_006455_110 Hb_007021_030 Hb_007021_030 Hb_065395_010--Hb_007021_030 Hb_005715_020 Hb_005715_020 Hb_065395_010--Hb_005715_020 Hb_074701_010 Hb_074701_010 Hb_065395_010--Hb_074701_010 Hb_138652_020 Hb_138652_020 Hb_065395_010--Hb_138652_020 Hb_057746_010 Hb_057746_010 Hb_065395_010--Hb_057746_010 Hb_000891_040 Hb_000891_040 Hb_087762_010--Hb_000891_040 Hb_003297_010 Hb_003297_010 Hb_087762_010--Hb_003297_010 Hb_155375_010 Hb_155375_010 Hb_087762_010--Hb_155375_010 Hb_002157_190 Hb_002157_190 Hb_087762_010--Hb_002157_190 Hb_002253_040 Hb_002253_040 Hb_087762_010--Hb_002253_040 Hb_007765_010 Hb_007765_010 Hb_087762_010--Hb_007765_010 Hb_000415_060 Hb_000415_060 Hb_000939_010--Hb_000415_060 Hb_000347_500 Hb_000347_500 Hb_000939_010--Hb_000347_500 Hb_000061_390 Hb_000061_390 Hb_000939_010--Hb_000061_390 Hb_071869_010 Hb_071869_010 Hb_000939_010--Hb_071869_010 Hb_000445_080 Hb_000445_080 Hb_000939_010--Hb_000445_080 Hb_000768_060 Hb_000768_060 Hb_000939_010--Hb_000768_060 Hb_176117_010 Hb_176117_010 Hb_000270_500--Hb_176117_010 Hb_181320_010 Hb_181320_010 Hb_000270_500--Hb_181320_010 Hb_080530_020 Hb_080530_020 Hb_000270_500--Hb_080530_020 Hb_005016_150 Hb_005016_150 Hb_000270_500--Hb_005016_150 Hb_007827_020 Hb_007827_020 Hb_000270_500--Hb_007827_020 Hb_000742_210 Hb_000742_210 Hb_000193_150--Hb_000742_210 Hb_000193_150--Hb_002157_190 Hb_035318_010 Hb_035318_010 Hb_000193_150--Hb_035318_010 Hb_000028_160 Hb_000028_160 Hb_000193_150--Hb_000028_160 Hb_003064_030 Hb_003064_030 Hb_000193_150--Hb_003064_030 Hb_000193_150--Hb_087762_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.526016 0.249775 0.105289 0 0 0.964366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13371 0.0701148 0.0649421 0.0562607 0.0722206

CAGE analysis