Hb_000218_020

Information

Type -
Description -
Location Contig218: 56685-59384
Sequence    

Annotation

kegg
ID rcu:RCOM_1621450
description synaptosomal associated protein, putative
nr
ID XP_002512109.1
description synaptosomal associated protein, putative [Ricinus communis]
swissprot
ID Q9LMG8
description Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1
trembl
ID B9RCW1
description Synaptosomal associated protein, putative OS=Ricinus communis GN=RCOM_1621450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22485: 55633-55880 , PASA_asmbl_22487: 58060-58537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000218_020 0.0 - - synaptosomal associated protein, putative [Ricinus communis]
2 Hb_002282_060 0.084094533 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
3 Hb_012082_010 0.0879897633 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
4 Hb_007576_220 0.0901989 - - PREDICTED: kanadaptin [Jatropha curcas]
5 Hb_000526_060 0.0908790404 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
6 Hb_003018_040 0.0909213844 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
7 Hb_002073_280 0.0937786304 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
8 Hb_002542_130 0.0950488842 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
9 Hb_007813_030 0.0957459985 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
10 Hb_005188_040 0.0963921319 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
11 Hb_007818_030 0.0975372985 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
12 Hb_005539_040 0.0982478564 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
13 Hb_000896_060 0.0986052383 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_001454_220 0.1011160665 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
15 Hb_044653_020 0.1029093791 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
16 Hb_000661_200 0.1033131172 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
17 Hb_013749_020 0.1034516682 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
18 Hb_009449_090 0.1034644309 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
19 Hb_008406_040 0.1040600451 - - -
20 Hb_000227_310 0.1057997785 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000218_020 Hb_000218_020 Hb_002282_060 Hb_002282_060 Hb_000218_020--Hb_002282_060 Hb_012082_010 Hb_012082_010 Hb_000218_020--Hb_012082_010 Hb_007576_220 Hb_007576_220 Hb_000218_020--Hb_007576_220 Hb_000526_060 Hb_000526_060 Hb_000218_020--Hb_000526_060 Hb_003018_040 Hb_003018_040 Hb_000218_020--Hb_003018_040 Hb_002073_280 Hb_002073_280 Hb_000218_020--Hb_002073_280 Hb_155159_010 Hb_155159_010 Hb_002282_060--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_002282_060--Hb_001231_090 Hb_002282_060--Hb_002073_280 Hb_010661_020 Hb_010661_020 Hb_002282_060--Hb_010661_020 Hb_002542_130 Hb_002542_130 Hb_002282_060--Hb_002542_130 Hb_000703_130 Hb_000703_130 Hb_002282_060--Hb_000703_130 Hb_044653_020 Hb_044653_020 Hb_012082_010--Hb_044653_020 Hb_002485_040 Hb_002485_040 Hb_012082_010--Hb_002485_040 Hb_000896_060 Hb_000896_060 Hb_012082_010--Hb_000896_060 Hb_012082_010--Hb_003018_040 Hb_000130_280 Hb_000130_280 Hb_012082_010--Hb_000130_280 Hb_009449_090 Hb_009449_090 Hb_007576_220--Hb_009449_090 Hb_007576_230 Hb_007576_230 Hb_007576_220--Hb_007576_230 Hb_007576_220--Hb_155159_010 Hb_005539_040 Hb_005539_040 Hb_007576_220--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_007576_220--Hb_000086_050 Hb_007576_220--Hb_002073_280 Hb_000526_060--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_000526_060--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_120470_010 Hb_120470_010 Hb_000526_060--Hb_120470_010 Hb_000526_060--Hb_155159_010 Hb_000526_060--Hb_000703_130 Hb_003018_040--Hb_044653_020 Hb_001454_220 Hb_001454_220 Hb_003018_040--Hb_001454_220 Hb_012038_010 Hb_012038_010 Hb_003018_040--Hb_012038_010 Hb_007017_070 Hb_007017_070 Hb_003018_040--Hb_007017_070 Hb_013749_020 Hb_013749_020 Hb_002073_280--Hb_013749_020 Hb_002073_280--Hb_155159_010 Hb_002073_280--Hb_000526_060 Hb_002073_280--Hb_000896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59191 16.5528 6.40812 4.91309 8.83325 4.53658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10847 3.44513 2.05323 4.18038 6.46795

CAGE analysis