Hb_000218_030

Information

Type -
Description -
Location Contig218: 69395-71887
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000218_030 0.0 - - -
2 Hb_001564_080 0.1441859219 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
3 Hb_002546_020 0.1452815576 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
4 Hb_000243_380 0.145628862 - - PREDICTED: histone H1 [Jatropha curcas]
5 Hb_000567_210 0.1553359889 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
6 Hb_002745_010 0.1604418726 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
7 Hb_001348_150 0.1606046773 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
8 Hb_003055_060 0.1653393846 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
9 Hb_000256_140 0.1661276193 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
10 Hb_022693_050 0.1663693143 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
11 Hb_004324_340 0.1665128425 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001195_570 0.1708477891 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
13 Hb_004032_270 0.1710766241 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
14 Hb_001623_140 0.1715639552 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
15 Hb_006949_020 0.1737381139 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
16 Hb_000432_040 0.1747630445 - - PREDICTED: remorin-like [Jatropha curcas]
17 Hb_005288_010 0.1755546316 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_031403_020 0.1761029769 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
19 Hb_000016_100 0.1768789745 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
20 Hb_004440_040 0.1783436431 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000218_030 Hb_000218_030 Hb_001564_080 Hb_001564_080 Hb_000218_030--Hb_001564_080 Hb_002546_020 Hb_002546_020 Hb_000218_030--Hb_002546_020 Hb_000243_380 Hb_000243_380 Hb_000218_030--Hb_000243_380 Hb_000567_210 Hb_000567_210 Hb_000218_030--Hb_000567_210 Hb_002745_010 Hb_002745_010 Hb_000218_030--Hb_002745_010 Hb_001348_150 Hb_001348_150 Hb_000218_030--Hb_001348_150 Hb_005653_060 Hb_005653_060 Hb_001564_080--Hb_005653_060 Hb_001894_050 Hb_001894_050 Hb_001564_080--Hb_001894_050 Hb_005551_050 Hb_005551_050 Hb_001564_080--Hb_005551_050 Hb_189208_020 Hb_189208_020 Hb_001564_080--Hb_189208_020 Hb_001817_160 Hb_001817_160 Hb_001564_080--Hb_001817_160 Hb_115241_010 Hb_115241_010 Hb_001564_080--Hb_115241_010 Hb_011512_080 Hb_011512_080 Hb_002546_020--Hb_011512_080 Hb_000218_010 Hb_000218_010 Hb_002546_020--Hb_000218_010 Hb_004324_110 Hb_004324_110 Hb_002546_020--Hb_004324_110 Hb_001638_160 Hb_001638_160 Hb_002546_020--Hb_001638_160 Hb_008959_020 Hb_008959_020 Hb_002546_020--Hb_008959_020 Hb_002546_020--Hb_001348_150 Hb_001511_110 Hb_001511_110 Hb_000243_380--Hb_001511_110 Hb_000340_110 Hb_000340_110 Hb_000243_380--Hb_000340_110 Hb_029223_050 Hb_029223_050 Hb_000243_380--Hb_029223_050 Hb_001053_030 Hb_001053_030 Hb_000243_380--Hb_001053_030 Hb_000243_380--Hb_002745_010 Hb_144824_010 Hb_144824_010 Hb_000243_380--Hb_144824_010 Hb_000732_140 Hb_000732_140 Hb_000567_210--Hb_000732_140 Hb_000859_060 Hb_000859_060 Hb_000567_210--Hb_000859_060 Hb_001623_140 Hb_001623_140 Hb_000567_210--Hb_001623_140 Hb_000203_160 Hb_000203_160 Hb_000567_210--Hb_000203_160 Hb_003052_140 Hb_003052_140 Hb_000567_210--Hb_003052_140 Hb_003055_060 Hb_003055_060 Hb_000567_210--Hb_003055_060 Hb_001220_030 Hb_001220_030 Hb_002745_010--Hb_001220_030 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_124677_060 Hb_124677_060 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_000140_070 Hb_000140_070 Hb_002745_010--Hb_000140_070 Hb_002745_010--Hb_001348_150 Hb_001247_120 Hb_001247_120 Hb_001348_150--Hb_001247_120 Hb_001348_150--Hb_076693_020 Hb_001348_150--Hb_001053_030 Hb_001348_150--Hb_000140_070 Hb_001348_150--Hb_011512_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.84694 4.23419 0.819929 0.340297 1.49816 0.796193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15711 2.29238 0.753502 1.01704 0.743893

CAGE analysis