Hb_000220_040

Information

Type -
Description -
Location Contig220: 82052-85943
Sequence    

Annotation

kegg
ID rcu:RCOM_0577370
description hypothetical protein
nr
ID XP_002526295.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B3H5R8
description Putative small ubiquitin-related modifier 8 OS=Arabidopsis thaliana GN=SUMO8 PE=1 SV=1
trembl
ID B9SJX6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0577370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22637: 82608-85855 , PASA_asmbl_22638: 82742-83128 , PASA_asmbl_22639: 85166-85491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002296_050 0.0663400299 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
3 Hb_000144_100 0.0689287227 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
4 Hb_000275_170 0.0723146032 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
5 Hb_003125_200 0.0794227327 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
6 Hb_004032_430 0.0809043699 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
7 Hb_000796_210 0.0815299641 - - conserved hypothetical protein [Ricinus communis]
8 Hb_120410_010 0.082789186 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
9 Hb_112798_020 0.0859789033 - - dnajc14 protein, putative [Ricinus communis]
10 Hb_000610_010 0.0863160152 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
11 Hb_000009_530 0.0867897698 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
12 Hb_000563_230 0.0892370194 - - phospholipase d zeta, putative [Ricinus communis]
13 Hb_004586_140 0.0893104116 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
14 Hb_000220_010 0.0896434605 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
15 Hb_002245_030 0.0904563806 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_008453_140 0.0911069373 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
17 Hb_000181_110 0.0922220917 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
18 Hb_003387_060 0.0929092978 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012389_020 0.0934272371 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
20 Hb_000032_270 0.0948580357 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_040 Hb_000220_040 Hb_002296_050 Hb_002296_050 Hb_000220_040--Hb_002296_050 Hb_000144_100 Hb_000144_100 Hb_000220_040--Hb_000144_100 Hb_000275_170 Hb_000275_170 Hb_000220_040--Hb_000275_170 Hb_003125_200 Hb_003125_200 Hb_000220_040--Hb_003125_200 Hb_004032_430 Hb_004032_430 Hb_000220_040--Hb_004032_430 Hb_000796_210 Hb_000796_210 Hb_000220_040--Hb_000796_210 Hb_000107_190 Hb_000107_190 Hb_002296_050--Hb_000107_190 Hb_000610_010 Hb_000610_010 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_021576_040 Hb_021576_040 Hb_002296_050--Hb_021576_040 Hb_000009_530 Hb_000009_530 Hb_002296_050--Hb_000009_530 Hb_000144_100--Hb_000009_530 Hb_000144_100--Hb_000610_010 Hb_000144_100--Hb_000275_170 Hb_000144_100--Hb_002296_050 Hb_003292_040 Hb_003292_040 Hb_000144_100--Hb_003292_040 Hb_000275_170--Hb_004032_430 Hb_004310_150 Hb_004310_150 Hb_000275_170--Hb_004310_150 Hb_112798_020 Hb_112798_020 Hb_000275_170--Hb_112798_020 Hb_005694_110 Hb_005694_110 Hb_000275_170--Hb_005694_110 Hb_000959_210 Hb_000959_210 Hb_000275_170--Hb_000959_210 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_004931_070 Hb_004931_070 Hb_003125_200--Hb_004931_070 Hb_012389_020 Hb_012389_020 Hb_003125_200--Hb_012389_020 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_004032_430--Hb_004310_150 Hb_004032_430--Hb_000959_210 Hb_004032_430--Hb_010068_040 Hb_011224_060 Hb_011224_060 Hb_004032_430--Hb_011224_060 Hb_003935_020 Hb_003935_020 Hb_004032_430--Hb_003935_020 Hb_003428_030 Hb_003428_030 Hb_000796_210--Hb_003428_030 Hb_000796_210--Hb_112798_020 Hb_000032_270 Hb_000032_270 Hb_000796_210--Hb_000032_270 Hb_000610_050 Hb_000610_050 Hb_000796_210--Hb_000610_050 Hb_007576_080 Hb_007576_080 Hb_000796_210--Hb_007576_080 Hb_002245_030 Hb_002245_030 Hb_000796_210--Hb_002245_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4466 17.9458 16.2235 11.4418 21.2483 16.0422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2019 25.0962 11.9046 8.87781 6.43143

CAGE analysis