Hb_000220_080

Information

Type -
Description -
Location Contig220: 154168-156691
Sequence    

Annotation

kegg
ID rcu:RCOM_0577550
description kinase, putative
nr
ID XP_002526303.1
description kinase, putative [Ricinus communis]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID B9SJY4
description Kinase, putative OS=Ricinus communis GN=RCOM_0577550 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22647: 153976-156629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_080 0.0 - - kinase, putative [Ricinus communis]
2 Hb_000000_120 0.0808524994 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
3 Hb_002316_170 0.0897759437 - - purine permease, putative [Ricinus communis]
4 Hb_000072_020 0.1103719797 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
5 Hb_001009_150 0.1158402559 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
6 Hb_000000_110 0.1159693482 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
7 Hb_006949_060 0.1172632177 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
8 Hb_001832_210 0.1188673482 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
9 Hb_002072_010 0.1217783691 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000120_310 0.1225486678 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
11 Hb_010407_030 0.1260027166 - - PREDICTED: casein kinase I-like [Jatropha curcas]
12 Hb_003506_020 0.1269879032 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
13 Hb_000649_120 0.1272827496 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_000019_170 0.1287635138 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
15 Hb_001195_420 0.1294588261 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
16 Hb_002685_030 0.1298859896 - - PREDICTED: protein SMG7L [Jatropha curcas]
17 Hb_000085_380 0.1317265254 - - conserved hypothetical protein [Ricinus communis]
18 Hb_030565_110 0.1322422587 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
19 Hb_005016_020 0.133445379 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
20 Hb_000227_320 0.1338010533 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000220_080 Hb_000220_080 Hb_000000_120 Hb_000000_120 Hb_000220_080--Hb_000000_120 Hb_002316_170 Hb_002316_170 Hb_000220_080--Hb_002316_170 Hb_000072_020 Hb_000072_020 Hb_000220_080--Hb_000072_020 Hb_001009_150 Hb_001009_150 Hb_000220_080--Hb_001009_150 Hb_000000_110 Hb_000000_110 Hb_000220_080--Hb_000000_110 Hb_006949_060 Hb_006949_060 Hb_000220_080--Hb_006949_060 Hb_003506_020 Hb_003506_020 Hb_000000_120--Hb_003506_020 Hb_005970_010 Hb_005970_010 Hb_000000_120--Hb_005970_010 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_000000_120--Hb_002316_170 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180 Hb_002316_170--Hb_006949_060 Hb_010407_030 Hb_010407_030 Hb_002316_170--Hb_010407_030 Hb_002316_170--Hb_001009_150 Hb_005772_030 Hb_005772_030 Hb_002316_170--Hb_005772_030 Hb_033363_010 Hb_033363_010 Hb_000072_020--Hb_033363_010 Hb_000227_320 Hb_000227_320 Hb_000072_020--Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000072_020--Hb_003964_110 Hb_002235_310 Hb_002235_310 Hb_000072_020--Hb_002235_310 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_002739_120 Hb_002739_120 Hb_001009_150--Hb_002739_120 Hb_001009_150--Hb_010407_030 Hb_001195_420 Hb_001195_420 Hb_001009_150--Hb_001195_420 Hb_000318_040 Hb_000318_040 Hb_001009_150--Hb_000318_040 Hb_001009_150--Hb_006949_060 Hb_028077_020 Hb_028077_020 Hb_001009_150--Hb_028077_020 Hb_005016_020 Hb_005016_020 Hb_000000_110--Hb_005016_020 Hb_001832_210 Hb_001832_210 Hb_000000_110--Hb_001832_210 Hb_001178_080 Hb_001178_080 Hb_000000_110--Hb_001178_080 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030 Hb_006949_060--Hb_010407_030 Hb_006949_060--Hb_000227_320 Hb_132840_030 Hb_132840_030 Hb_006949_060--Hb_132840_030 Hb_000950_040 Hb_000950_040 Hb_006949_060--Hb_000950_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.28984 32.2431 21.5657 44.2471 8.25934 9.01832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06375 1.53687 4.87527 40.6374 20.1739

CAGE analysis