Hb_000220_100

Information

Type -
Description -
Location Contig220: 184652-190886
Sequence    

Annotation

kegg
ID rcu:RCOM_0577570
description oxidoreductase, putative (EC:1.14.11.4)
nr
ID XP_012075705.1
description PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
swissprot
ID Q3ED68
description Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2
trembl
ID A0A067KFJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09294 PE=4 SV=1
Gene Ontology
ID GO:0005506
description uncharacterized pkhd-type hydroxylase at1g22950-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22649: 184663-187869 , PASA_asmbl_22650: 190058-190515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_100 0.0 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
2 Hb_000359_060 0.047535757 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
3 Hb_000173_410 0.0580289904 - - PREDICTED: BI1-like protein [Jatropha curcas]
4 Hb_002045_070 0.0682623945 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
5 Hb_000608_050 0.0692346145 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
6 Hb_000454_090 0.0725064358 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
7 Hb_033594_080 0.0731513851 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
8 Hb_004078_040 0.075217082 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
9 Hb_000890_150 0.0752873308 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
10 Hb_004109_220 0.0765151441 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
11 Hb_004108_220 0.0774018252 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
12 Hb_003057_060 0.0796866092 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000252_100 0.0799860697 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
14 Hb_011218_090 0.08040401 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
15 Hb_005653_070 0.0823496637 - - K+ transport growth defect-like protein [Hevea brasiliensis]
16 Hb_168978_010 0.0824162315 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
17 Hb_012022_040 0.0829436732 - - Protein SIS1, putative [Ricinus communis]
18 Hb_005765_050 0.0843966771 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
19 Hb_149985_010 0.0844257396 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
20 Hb_001141_420 0.0848199915 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_100 Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000220_100--Hb_000359_060 Hb_000173_410 Hb_000173_410 Hb_000220_100--Hb_000173_410 Hb_002045_070 Hb_002045_070 Hb_000220_100--Hb_002045_070 Hb_000608_050 Hb_000608_050 Hb_000220_100--Hb_000608_050 Hb_000454_090 Hb_000454_090 Hb_000220_100--Hb_000454_090 Hb_033594_080 Hb_033594_080 Hb_000220_100--Hb_033594_080 Hb_000890_150 Hb_000890_150 Hb_000359_060--Hb_000890_150 Hb_011218_090 Hb_011218_090 Hb_000359_060--Hb_011218_090 Hb_149985_010 Hb_149985_010 Hb_000359_060--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_000359_060--Hb_000173_410 Hb_000173_410--Hb_000454_090 Hb_000252_100 Hb_000252_100 Hb_000173_410--Hb_000252_100 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_004078_040 Hb_004078_040 Hb_000173_410--Hb_004078_040 Hb_002301_160 Hb_002301_160 Hb_002045_070--Hb_002301_160 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290 Hb_000608_050--Hb_005765_050 Hb_148121_040 Hb_148121_040 Hb_000608_050--Hb_148121_040 Hb_000086_140 Hb_000086_140 Hb_000608_050--Hb_000086_140 Hb_000805_240 Hb_000805_240 Hb_000608_050--Hb_000805_240 Hb_000608_050--Hb_004078_040 Hb_000454_090--Hb_000252_100 Hb_000454_090--Hb_004078_040 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_000454_090--Hb_005765_050 Hb_033594_080--Hb_000890_150 Hb_033594_080--Hb_000359_060 Hb_000215_320 Hb_000215_320 Hb_033594_080--Hb_000215_320 Hb_033594_080--Hb_004108_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04842 7.36658 8.41307 15.5822 5.57558 4.27605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.78099 11.6657 11.0269 7.73822 7.5321

CAGE analysis