Hb_000220_120

Information

Type -
Description -
Location Contig220: 217991-236383
Sequence    

Annotation

kegg
ID rcu:RCOM_0577590
description ATP-dependent RNA helicase, putative
nr
ID XP_012075702.1
description PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
swissprot
ID Q8VHK9
description ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=1 SV=2
trembl
ID A0A067KT31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09292 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22653: 218213-222232 , PASA_asmbl_22654: 222873-224556 , PASA_asmbl_22655: 224575-226562 , PASA_asmbl_22656: 226638-227540 , PASA_asmbl_22657: 229430-230537 , PASA_asmbl_22659: 232610-234277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_120 0.0 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
2 Hb_000200_110 0.0621377786 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
3 Hb_000049_250 0.0732199569 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
4 Hb_000787_200 0.0746799982 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001477_020 0.0754514044 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
6 Hb_000428_030 0.0783649228 - - hypothetical protein RCOM_1520720 [Ricinus communis]
7 Hb_000318_150 0.0796812102 - - RNA-binding protein Nova-1, putative [Ricinus communis]
8 Hb_000331_100 0.0848114959 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
9 Hb_007245_020 0.0873596775 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
10 Hb_006478_030 0.0878092324 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
11 Hb_000834_230 0.0880870257 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
12 Hb_000960_080 0.0883335639 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
13 Hb_008165_020 0.088871364 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
14 Hb_007765_030 0.0890435285 - - PREDICTED: neutral ceramidase [Jatropha curcas]
15 Hb_001031_090 0.0891713378 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
16 Hb_011925_020 0.0897641341 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_143629_020 0.0899163466 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
18 Hb_002357_070 0.0901207011 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
19 Hb_000665_260 0.0906072572 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
20 Hb_000035_100 0.090971805 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000220_120 Hb_000220_120 Hb_000200_110 Hb_000200_110 Hb_000220_120--Hb_000200_110 Hb_000049_250 Hb_000049_250 Hb_000220_120--Hb_000049_250 Hb_000787_200 Hb_000787_200 Hb_000220_120--Hb_000787_200 Hb_001477_020 Hb_001477_020 Hb_000220_120--Hb_001477_020 Hb_000428_030 Hb_000428_030 Hb_000220_120--Hb_000428_030 Hb_000318_150 Hb_000318_150 Hb_000220_120--Hb_000318_150 Hb_000200_110--Hb_001477_020 Hb_000200_110--Hb_000428_030 Hb_000243_400 Hb_000243_400 Hb_000200_110--Hb_000243_400 Hb_000331_100 Hb_000331_100 Hb_000200_110--Hb_000331_100 Hb_143629_020 Hb_143629_020 Hb_000200_110--Hb_143629_020 Hb_011925_020 Hb_011925_020 Hb_000049_250--Hb_011925_020 Hb_000321_090 Hb_000321_090 Hb_000049_250--Hb_000321_090 Hb_000080_110 Hb_000080_110 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_005074_020 Hb_005074_020 Hb_000049_250--Hb_005074_020 Hb_000787_200--Hb_000318_150 Hb_011674_040 Hb_011674_040 Hb_000787_200--Hb_011674_040 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000787_200--Hb_000342_050 Hb_000270_170 Hb_000270_170 Hb_000787_200--Hb_000270_170 Hb_003849_280 Hb_003849_280 Hb_001477_020--Hb_003849_280 Hb_007012_040 Hb_007012_040 Hb_001477_020--Hb_007012_040 Hb_007245_020 Hb_007245_020 Hb_001477_020--Hb_007245_020 Hb_001124_050 Hb_001124_050 Hb_001477_020--Hb_001124_050 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_002078_470 Hb_002078_470 Hb_000428_030--Hb_002078_470 Hb_000428_030--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000428_030--Hb_008165_020 Hb_004551_020 Hb_004551_020 Hb_000428_030--Hb_004551_020 Hb_000960_080 Hb_000960_080 Hb_000318_150--Hb_000960_080 Hb_002357_070 Hb_002357_070 Hb_000318_150--Hb_002357_070 Hb_000059_240 Hb_000059_240 Hb_000318_150--Hb_000059_240 Hb_000318_150--Hb_000270_170 Hb_000173_190 Hb_000173_190 Hb_000318_150--Hb_000173_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19447 7.71924 4.26261 4.3921 2.0792 2.58836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.599 2.19341 1.40713 7.36239 5.51132

CAGE analysis