Hb_000220_130

Information

Type -
Description -
Location Contig220: 244482-252366
Sequence    

Annotation

kegg
ID tcc:TCM_009019
description Phosphatidyl serine synthase family protein isoform 1
nr
ID XP_007044113.1
description Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
swissprot
ID F4HXY7
description CDP-diacylglycerol--serine O-phosphatidyltransferase 1 OS=Arabidopsis thaliana GN=PSS1 PE=1 SV=1
trembl
ID A0A061E4I8
description Phosphatidyl serine synthase family protein isoform 1 OS=Theobroma cacao GN=TCM_009019 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cdp-diacylglycerol--serine o-phosphatidyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22661: 244910-252277 , PASA_asmbl_22662: 246727-252277 , PASA_asmbl_22663: 248790-252277 , PASA_asmbl_22664: 245463-245939 , PASA_asmbl_22665: 248269-248700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_130 0.0 - - Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
2 Hb_000141_040 0.0854679643 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
3 Hb_030736_080 0.0974206448 - - conserved hypothetical protein [Ricinus communis]
4 Hb_145880_030 0.1000217879 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
5 Hb_005147_100 0.1003760046 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007778_030 0.1016935254 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_033594_110 0.1032765319 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
8 Hb_001817_090 0.1038269967 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
9 Hb_165132_010 0.1052411666 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
10 Hb_002301_140 0.1072683663 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
11 Hb_009773_020 0.1081367972 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
12 Hb_000987_070 0.108558685 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
13 Hb_134949_020 0.1103206566 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
14 Hb_002030_040 0.1108259225 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
15 Hb_003687_110 0.1116002141 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
16 Hb_023226_040 0.1116477893 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
17 Hb_001269_680 0.1124134643 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
18 Hb_002518_050 0.1160625966 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
19 Hb_002007_060 0.1178538558 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
20 Hb_000160_130 0.1197218241 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_130 Hb_000220_130 Hb_000141_040 Hb_000141_040 Hb_000220_130--Hb_000141_040 Hb_030736_080 Hb_030736_080 Hb_000220_130--Hb_030736_080 Hb_145880_030 Hb_145880_030 Hb_000220_130--Hb_145880_030 Hb_005147_100 Hb_005147_100 Hb_000220_130--Hb_005147_100 Hb_007778_030 Hb_007778_030 Hb_000220_130--Hb_007778_030 Hb_033594_110 Hb_033594_110 Hb_000220_130--Hb_033594_110 Hb_000141_040--Hb_145880_030 Hb_002007_060 Hb_002007_060 Hb_000141_040--Hb_002007_060 Hb_000395_290 Hb_000395_290 Hb_000141_040--Hb_000395_290 Hb_003363_110 Hb_003363_110 Hb_000141_040--Hb_003363_110 Hb_000866_270 Hb_000866_270 Hb_000141_040--Hb_000866_270 Hb_003078_040 Hb_003078_040 Hb_000141_040--Hb_003078_040 Hb_000987_070 Hb_000987_070 Hb_030736_080--Hb_000987_070 Hb_000905_060 Hb_000905_060 Hb_030736_080--Hb_000905_060 Hb_000635_180 Hb_000635_180 Hb_030736_080--Hb_000635_180 Hb_001832_060 Hb_001832_060 Hb_030736_080--Hb_001832_060 Hb_004453_170 Hb_004453_170 Hb_030736_080--Hb_004453_170 Hb_001247_100 Hb_001247_100 Hb_030736_080--Hb_001247_100 Hb_010407_040 Hb_010407_040 Hb_145880_030--Hb_010407_040 Hb_145880_030--Hb_007778_030 Hb_001662_070 Hb_001662_070 Hb_145880_030--Hb_001662_070 Hb_165132_010 Hb_165132_010 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_002188_130 Hb_002188_130 Hb_005147_100--Hb_002188_130 Hb_002968_060 Hb_002968_060 Hb_005147_100--Hb_002968_060 Hb_000230_200 Hb_000230_200 Hb_005147_100--Hb_000230_200 Hb_001269_680 Hb_001269_680 Hb_005147_100--Hb_001269_680 Hb_005147_100--Hb_000141_040 Hb_007778_030--Hb_001269_680 Hb_007778_030--Hb_010407_040 Hb_007778_030--Hb_165132_010 Hb_000163_160 Hb_000163_160 Hb_007778_030--Hb_000163_160 Hb_000160_130 Hb_000160_130 Hb_007778_030--Hb_000160_130 Hb_000630_060 Hb_000630_060 Hb_033594_110--Hb_000630_060 Hb_003126_090 Hb_003126_090 Hb_033594_110--Hb_003126_090 Hb_033594_110--Hb_165132_010 Hb_134949_020 Hb_134949_020 Hb_033594_110--Hb_134949_020 Hb_033594_110--Hb_145880_030 Hb_001016_030 Hb_001016_030 Hb_033594_110--Hb_001016_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3025 11.1663 9.92521 19.8493 14.3429 16.2082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.7545 34.6262 17.8293 3.71562 4.07458

CAGE analysis