Hb_000220_140

Information

Type -
Description -
Location Contig220: 255459-257124
Sequence    

Annotation

kegg
ID rcu:RCOM_0577730
description palmitoyl-acyl carrier protein thioesterase (EC:3.1.2.14)
nr
ID XP_002526311.1
description palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
swissprot
ID Q9SQI3
description Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
trembl
ID B9SJZ2
description Palmitoyl-acyl carrier protein thioesterase OS=Ricinus communis GN=RCOM_0577730 PE=4 SV=1
Gene Ontology
ID GO:0004320
description palmitoyl-acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_140 0.0 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
2 Hb_006478_170 0.236752726 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
3 Hb_003747_110 0.2495481978 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
4 Hb_004296_030 0.2612674794 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
5 Hb_001649_120 0.2816716925 - - -
6 Hb_003777_010 0.2843830259 - - -
7 Hb_122911_020 0.289504822 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_014510_010 0.3008044918 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
9 Hb_005045_040 0.322349675 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
10 Hb_005736_070 0.3409355465 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
11 Hb_124207_010 0.3423270006 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000523_060 0.3457567316 - - -
13 Hb_000510_350 0.3457765577 - - Putative polyprotein [Oryza sativa Japonica Group]
14 Hb_012553_010 0.3460491432 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
15 Hb_002787_100 0.3461591811 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
16 Hb_000291_020 0.3462672579 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
17 Hb_002035_070 0.3549853178 - - hypothetical protein CICLE_v10033569mg [Citrus clementina]
18 Hb_000878_150 0.3553513638 - - Gibberellin receptor GID1, putative [Ricinus communis]
19 Hb_004460_040 0.3563578075 - - -
20 Hb_108802_010 0.357871451 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_140 Hb_000220_140 Hb_006478_170 Hb_006478_170 Hb_000220_140--Hb_006478_170 Hb_003747_110 Hb_003747_110 Hb_000220_140--Hb_003747_110 Hb_004296_030 Hb_004296_030 Hb_000220_140--Hb_004296_030 Hb_001649_120 Hb_001649_120 Hb_000220_140--Hb_001649_120 Hb_003777_010 Hb_003777_010 Hb_000220_140--Hb_003777_010 Hb_122911_020 Hb_122911_020 Hb_000220_140--Hb_122911_020 Hb_014510_010 Hb_014510_010 Hb_006478_170--Hb_014510_010 Hb_006478_170--Hb_004296_030 Hb_005288_030 Hb_005288_030 Hb_006478_170--Hb_005288_030 Hb_006478_170--Hb_003777_010 Hb_005045_040 Hb_005045_040 Hb_006478_170--Hb_005045_040 Hb_003799_020 Hb_003799_020 Hb_003747_110--Hb_003799_020 Hb_006788_080 Hb_006788_080 Hb_003747_110--Hb_006788_080 Hb_000042_370 Hb_000042_370 Hb_003747_110--Hb_000042_370 Hb_000302_210 Hb_000302_210 Hb_003747_110--Hb_000302_210 Hb_000985_070 Hb_000985_070 Hb_003747_110--Hb_000985_070 Hb_004296_030--Hb_014510_010 Hb_001545_030 Hb_001545_030 Hb_004296_030--Hb_001545_030 Hb_004296_030--Hb_005045_040 Hb_008643_150 Hb_008643_150 Hb_004296_030--Hb_008643_150 Hb_000111_220 Hb_000111_220 Hb_001649_120--Hb_000111_220 Hb_004607_100 Hb_004607_100 Hb_001649_120--Hb_004607_100 Hb_004460_040 Hb_004460_040 Hb_001649_120--Hb_004460_040 Hb_008173_100 Hb_008173_100 Hb_001649_120--Hb_008173_100 Hb_001649_120--Hb_003747_110 Hb_003777_010--Hb_005045_040 Hb_001338_060 Hb_001338_060 Hb_003777_010--Hb_001338_060 Hb_071586_010 Hb_071586_010 Hb_003777_010--Hb_071586_010 Hb_001462_020 Hb_001462_020 Hb_003777_010--Hb_001462_020 Hb_096671_010 Hb_096671_010 Hb_003777_010--Hb_096671_010 Hb_126024_010 Hb_126024_010 Hb_122911_020--Hb_126024_010 Hb_000142_020 Hb_000142_020 Hb_122911_020--Hb_000142_020 Hb_004488_010 Hb_004488_010 Hb_122911_020--Hb_004488_010 Hb_122911_020--Hb_014510_010 Hb_038758_010 Hb_038758_010 Hb_122911_020--Hb_038758_010 Hb_002019_040 Hb_002019_040 Hb_122911_020--Hb_002019_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.154199 0.0275924 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0585301 0.037779 0

CAGE analysis