Hb_000220_170

Information

Type -
Description -
Location Contig220: 307145-307711
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_170 0.0 - - -
2 Hb_111693_010 0.0500690404 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
3 Hb_004055_080 0.084121542 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_002553_100 0.1070222589 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
5 Hb_001789_010 0.1128567303 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
6 Hb_111985_120 0.1163959622 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
7 Hb_058526_010 0.1178986986 - - -
8 Hb_111985_160 0.12026831 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
9 Hb_005653_100 0.1206980564 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
10 Hb_001609_080 0.1225368096 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
11 Hb_000029_420 0.1343001124 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
12 Hb_002374_110 0.1449439076 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
13 Hb_003166_040 0.149653595 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
14 Hb_001723_070 0.1504465209 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
15 Hb_127743_030 0.1523441027 - - amino acid transporter, putative [Ricinus communis]
16 Hb_000288_140 0.1528094636 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
17 Hb_009778_050 0.1534061636 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
18 Hb_002027_310 0.1597898069 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001006_200 0.1653340964 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
20 Hb_006919_010 0.1656055282 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]

Gene co-expression network

sample Hb_000220_170 Hb_000220_170 Hb_111693_010 Hb_111693_010 Hb_000220_170--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_000220_170--Hb_004055_080 Hb_002553_100 Hb_002553_100 Hb_000220_170--Hb_002553_100 Hb_001789_010 Hb_001789_010 Hb_000220_170--Hb_001789_010 Hb_111985_120 Hb_111985_120 Hb_000220_170--Hb_111985_120 Hb_058526_010 Hb_058526_010 Hb_000220_170--Hb_058526_010 Hb_111693_010--Hb_004055_080 Hb_111693_010--Hb_058526_010 Hb_005653_100 Hb_005653_100 Hb_111693_010--Hb_005653_100 Hb_111693_010--Hb_001789_010 Hb_000029_420 Hb_000029_420 Hb_111693_010--Hb_000029_420 Hb_004055_080--Hb_058526_010 Hb_004055_080--Hb_000029_420 Hb_001473_100 Hb_001473_100 Hb_004055_080--Hb_001473_100 Hb_004055_080--Hb_005653_100 Hb_002553_100--Hb_001789_010 Hb_002553_100--Hb_111985_120 Hb_002553_100--Hb_111693_010 Hb_001006_200 Hb_001006_200 Hb_002553_100--Hb_001006_200 Hb_174514_010 Hb_174514_010 Hb_002553_100--Hb_174514_010 Hb_001789_010--Hb_111985_120 Hb_001377_480 Hb_001377_480 Hb_001789_010--Hb_001377_480 Hb_187211_010 Hb_187211_010 Hb_001789_010--Hb_187211_010 Hb_111985_120--Hb_001377_480 Hb_111985_120--Hb_111693_010 Hb_111985_160 Hb_111985_160 Hb_111985_120--Hb_111985_160 Hb_001101_020 Hb_001101_020 Hb_111985_120--Hb_001101_020 Hb_003166_040 Hb_003166_040 Hb_058526_010--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_058526_010--Hb_127743_030 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_007483_030 Hb_007483_030 Hb_058526_010--Hb_007483_030 Hb_002374_110 Hb_002374_110 Hb_058526_010--Hb_002374_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.75238 2.68263 0.949087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.73847 0

CAGE analysis