Hb_000220_210

Information

Type -
Description -
Location Contig220: 326060-330331
Sequence    

Annotation

kegg
ID tcc:TCM_009037
description Sec-independent periplasmic protein translocase
nr
ID XP_012075694.1
description PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
swissprot
ID Q94G17
description Sec-independent protein translocase protein TATC, chloroplastic OS=Pisum sativum GN=TATC PE=1 SV=1
trembl
ID A0A067KRT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09288 PE=3 SV=1
Gene Ontology
ID GO:0031361
description sec-independent protein translocase protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22668: 326707-330330 , PASA_asmbl_22669: 327302-327568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_210 0.0 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
2 Hb_002542_160 0.0412670961 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
3 Hb_000309_020 0.0636042017 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
4 Hb_000345_370 0.0647875512 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
5 Hb_001427_040 0.0769550167 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
6 Hb_001472_160 0.0774601375 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_004884_180 0.0795316455 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
8 Hb_000144_060 0.085668365 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_002282_070 0.0891918647 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
10 Hb_033312_010 0.0898959402 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_025477_050 0.091305417 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000613_120 0.0915784833 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
13 Hb_000085_070 0.0929097264 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
14 Hb_010174_090 0.093584908 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
15 Hb_016461_030 0.0960122104 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_001660_120 0.0971028657 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
17 Hb_013405_080 0.0981827035 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
18 Hb_001623_130 0.1010486336 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_113347_010 0.1011689781 - - hypothetical protein CISIN_1g009336mg [Citrus sinensis]
20 Hb_000300_470 0.1015511504 - - PREDICTED: nucleolin-like [Jatropha curcas]

Gene co-expression network

sample Hb_000220_210 Hb_000220_210 Hb_002542_160 Hb_002542_160 Hb_000220_210--Hb_002542_160 Hb_000309_020 Hb_000309_020 Hb_000220_210--Hb_000309_020 Hb_000345_370 Hb_000345_370 Hb_000220_210--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_000220_210--Hb_001427_040 Hb_001472_160 Hb_001472_160 Hb_000220_210--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000220_210--Hb_004884_180 Hb_002542_160--Hb_000309_020 Hb_002542_160--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_002542_160--Hb_000085_070 Hb_016461_030 Hb_016461_030 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_000480_040 Hb_000480_040 Hb_000309_020--Hb_000480_040 Hb_000309_020--Hb_000345_370 Hb_000309_020--Hb_000085_070 Hb_000144_060 Hb_000144_060 Hb_000309_020--Hb_000144_060 Hb_000345_370--Hb_000144_060 Hb_002282_070 Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_000345_370--Hb_016461_030 Hb_001427_040--Hb_002282_070 Hb_001427_040--Hb_016461_030 Hb_001427_040--Hb_002542_160 Hb_001427_040--Hb_000345_370 Hb_002660_190 Hb_002660_190 Hb_001427_040--Hb_002660_190 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_001472_160--Hb_004884_180 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_031042_060 Hb_031042_060 Hb_004884_180--Hb_031042_060 Hb_000771_170 Hb_000771_170 Hb_004884_180--Hb_000771_170 Hb_010174_090 Hb_010174_090 Hb_004884_180--Hb_010174_090 Hb_004884_180--Hb_004225_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.00084 5.29388 13.17 5.89973 7.53805 5.44222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38158 5.24421 3.32322 6.77949 23.2763

CAGE analysis