Hb_000221_010

Information

Type -
Description -
Location Contig221: 4740-8709
Sequence    

Annotation

kegg
ID bvg:104905624
description uncharacterized LOC104905624
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_010 0.0 - - polyprotein [Oryza australiensis]
2 Hb_001019_110 0.0029536626 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
3 Hb_000381_060 0.0033867217 - - -
4 Hb_002817_020 0.0042036341 - - -
5 Hb_002391_280 0.0045731429 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
6 Hb_000008_100 0.0056550396 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
7 Hb_001132_020 0.006214096 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_012143_010 0.0091305166 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
9 Hb_000334_100 0.0092289727 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
10 Hb_046615_050 0.0124804747 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
11 Hb_000489_050 0.0127393469 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
12 Hb_000691_040 0.0134318162 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
13 Hb_001268_270 0.0138827549 - - protein binding protein, putative [Ricinus communis]
14 Hb_003667_030 0.0148307516 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
15 Hb_004126_020 0.0174688843 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
16 Hb_002151_140 0.0215738821 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
17 Hb_156853_010 0.0218262423 - - PREDICTED: vinorine synthase-like [Populus euphratica]
18 Hb_007552_030 0.0222846442 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
19 Hb_000784_050 0.0233038661 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
20 Hb_000280_070 0.0238283815 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000221_010 Hb_000221_010 Hb_001019_110 Hb_001019_110 Hb_000221_010--Hb_001019_110 Hb_000381_060 Hb_000381_060 Hb_000221_010--Hb_000381_060 Hb_002817_020 Hb_002817_020 Hb_000221_010--Hb_002817_020 Hb_002391_280 Hb_002391_280 Hb_000221_010--Hb_002391_280 Hb_000008_100 Hb_000008_100 Hb_000221_010--Hb_000008_100 Hb_001132_020 Hb_001132_020 Hb_000221_010--Hb_001132_020 Hb_001019_110--Hb_000381_060 Hb_001019_110--Hb_001132_020 Hb_012143_010 Hb_012143_010 Hb_001019_110--Hb_012143_010 Hb_001019_110--Hb_002817_020 Hb_001019_110--Hb_002391_280 Hb_000381_060--Hb_001132_020 Hb_000381_060--Hb_012143_010 Hb_000381_060--Hb_002817_020 Hb_000381_060--Hb_002391_280 Hb_002817_020--Hb_002391_280 Hb_002817_020--Hb_000008_100 Hb_000334_100 Hb_000334_100 Hb_002817_020--Hb_000334_100 Hb_002391_280--Hb_000008_100 Hb_002391_280--Hb_000334_100 Hb_000008_100--Hb_000334_100 Hb_000489_050 Hb_000489_050 Hb_000008_100--Hb_000489_050 Hb_000008_100--Hb_001019_110 Hb_001132_020--Hb_012143_010 Hb_046615_050 Hb_046615_050 Hb_001132_020--Hb_046615_050 Hb_000691_040 Hb_000691_040 Hb_001132_020--Hb_000691_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0139344 0.00442901 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis