Hb_000221_100

Information

Type -
Description -
Location Contig221: 114222-116060
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07000g
description POPTRDRAFT_819098; hypothetical protein
nr
ID XP_002308991.1
description hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
swissprot
ID Q291A0
description 39S ribosomal protein L41, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL41 PE=3 SV=1
trembl
ID B9HAL7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07000g PE=4 SV=1
Gene Ontology
ID GO:0005840
description 39s ribosomal protein l41- mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_100 0.0 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
2 Hb_145761_010 0.1052464578 - - -
3 Hb_002918_280 0.1258280474 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
4 Hb_007625_020 0.1314422392 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
5 Hb_007451_030 0.1446384325 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
6 Hb_000977_140 0.1449154024 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
7 Hb_000680_150 0.1471684887 - - PREDICTED: protein STU1-like [Jatropha curcas]
8 Hb_003777_070 0.1532228642 - - -
9 Hb_004295_020 0.1538254399 - - thioredoxin II-type 1 [Hevea brasiliensis]
10 Hb_005031_070 0.1548597452 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]
11 Hb_004545_160 0.1590340012 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
12 Hb_007992_030 0.1596483859 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
13 Hb_000038_130 0.160376263 - - -
14 Hb_027472_090 0.1604799191 - - -
15 Hb_073973_110 0.1617510494 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
16 Hb_003029_080 0.1627785621 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
17 Hb_000366_100 0.1632963588 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
18 Hb_017170_020 0.1672940439 - - PREDICTED: OPA3-like protein isoform X2 [Jatropha curcas]
19 Hb_012395_100 0.1688431677 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
20 Hb_002863_010 0.1693107052 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]

Gene co-expression network

sample Hb_000221_100 Hb_000221_100 Hb_145761_010 Hb_145761_010 Hb_000221_100--Hb_145761_010 Hb_002918_280 Hb_002918_280 Hb_000221_100--Hb_002918_280 Hb_007625_020 Hb_007625_020 Hb_000221_100--Hb_007625_020 Hb_007451_030 Hb_007451_030 Hb_000221_100--Hb_007451_030 Hb_000977_140 Hb_000977_140 Hb_000221_100--Hb_000977_140 Hb_000680_150 Hb_000680_150 Hb_000221_100--Hb_000680_150 Hb_145761_010--Hb_000680_150 Hb_003777_070 Hb_003777_070 Hb_145761_010--Hb_003777_070 Hb_145761_010--Hb_002918_280 Hb_145761_010--Hb_000977_140 Hb_000183_070 Hb_000183_070 Hb_145761_010--Hb_000183_070 Hb_010883_210 Hb_010883_210 Hb_002918_280--Hb_010883_210 Hb_084934_010 Hb_084934_010 Hb_002918_280--Hb_084934_010 Hb_005031_070 Hb_005031_070 Hb_002918_280--Hb_005031_070 Hb_002918_280--Hb_000680_150 Hb_001386_130 Hb_001386_130 Hb_002918_280--Hb_001386_130 Hb_004545_160 Hb_004545_160 Hb_007625_020--Hb_004545_160 Hb_012305_060 Hb_012305_060 Hb_007625_020--Hb_012305_060 Hb_007625_020--Hb_007451_030 Hb_000366_100 Hb_000366_100 Hb_007625_020--Hb_000366_100 Hb_007992_030 Hb_007992_030 Hb_007625_020--Hb_007992_030 Hb_000752_060 Hb_000752_060 Hb_007625_020--Hb_000752_060 Hb_000193_230 Hb_000193_230 Hb_007451_030--Hb_000193_230 Hb_001804_040 Hb_001804_040 Hb_007451_030--Hb_001804_040 Hb_007451_030--Hb_012305_060 Hb_007451_030--Hb_000680_150 Hb_007451_030--Hb_004545_160 Hb_044662_040 Hb_044662_040 Hb_000977_140--Hb_044662_040 Hb_000977_140--Hb_007992_030 Hb_178345_010 Hb_178345_010 Hb_000977_140--Hb_178345_010 Hb_000977_140--Hb_000183_070 Hb_001437_300 Hb_001437_300 Hb_000977_140--Hb_001437_300 Hb_000038_130 Hb_000038_130 Hb_000977_140--Hb_000038_130 Hb_000680_150--Hb_001386_130 Hb_000590_090 Hb_000590_090 Hb_000680_150--Hb_000590_090 Hb_002681_040 Hb_002681_040 Hb_000680_150--Hb_002681_040 Hb_001514_020 Hb_001514_020 Hb_000680_150--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_000680_150--Hb_001493_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.57526 0.86359 0.193485 0.166888 4.62772 3.75546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37148 6.0775 0.761935 0.217694 0

CAGE analysis