Hb_000221_130

Information

Type -
Description -
Location Contig221: 181333-184636
Sequence    

Annotation

kegg
ID vvi:104882489
description thylakoid lumenal 29 kDa protein, chloroplastic
nr
ID NP_001295711.1
description thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID Q9THX6
description Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1
trembl
ID W8E036
description Ascorbate peroxidase OS=Jatropha curcas GN=APX PE=2 SV=1
Gene Ontology
ID GO:0005634
description thylakoid lumenal 29 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22776: 181292-184627 , PASA_asmbl_22777: 181346-184573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_130 0.0 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_001269_480 0.0570413184 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
3 Hb_007044_020 0.0584260756 - - unnamed protein product [Vitis vinifera]
4 Hb_008948_130 0.060168738 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010812_030 0.0647130079 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001310_020 0.0684189561 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
7 Hb_001191_060 0.0693000214 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
8 Hb_005483_050 0.0737187513 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010697_020 0.0759799105 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001348_160 0.0774425682 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_003847_070 0.0782881576 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
12 Hb_002818_130 0.0800004491 - - cytochrome P450, putative [Ricinus communis]
13 Hb_003033_020 0.0811279739 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
14 Hb_000009_470 0.0817694858 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_029622_060 0.0843312748 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
16 Hb_000251_160 0.0856274846 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_003186_030 0.0858050591 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
18 Hb_002809_030 0.0867491466 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011344_030 0.0876974502 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
20 Hb_176135_010 0.0881209646 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000221_130 Hb_000221_130 Hb_001269_480 Hb_001269_480 Hb_000221_130--Hb_001269_480 Hb_007044_020 Hb_007044_020 Hb_000221_130--Hb_007044_020 Hb_008948_130 Hb_008948_130 Hb_000221_130--Hb_008948_130 Hb_010812_030 Hb_010812_030 Hb_000221_130--Hb_010812_030 Hb_001310_020 Hb_001310_020 Hb_000221_130--Hb_001310_020 Hb_001191_060 Hb_001191_060 Hb_000221_130--Hb_001191_060 Hb_001269_480--Hb_001191_060 Hb_002818_130 Hb_002818_130 Hb_001269_480--Hb_002818_130 Hb_001269_480--Hb_001310_020 Hb_001348_160 Hb_001348_160 Hb_001269_480--Hb_001348_160 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020 Hb_011344_030 Hb_011344_030 Hb_007044_020--Hb_011344_030 Hb_003053_080 Hb_003053_080 Hb_007044_020--Hb_003053_080 Hb_007044_020--Hb_010812_030 Hb_000009_470 Hb_000009_470 Hb_007044_020--Hb_000009_470 Hb_007044_020--Hb_001269_480 Hb_003033_020 Hb_003033_020 Hb_008948_130--Hb_003033_020 Hb_008948_130--Hb_007044_020 Hb_008948_130--Hb_001191_060 Hb_008948_130--Hb_010812_030 Hb_008948_130--Hb_001310_020 Hb_000029_150 Hb_000029_150 Hb_010812_030--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_010812_030--Hb_158597_010 Hb_010812_030--Hb_001269_480 Hb_005483_050 Hb_005483_050 Hb_010812_030--Hb_005483_050 Hb_005736_030 Hb_005736_030 Hb_010812_030--Hb_005736_030 Hb_001310_020--Hb_001191_060 Hb_001310_020--Hb_002818_130 Hb_011381_120 Hb_011381_120 Hb_001310_020--Hb_011381_120 Hb_001310_020--Hb_001348_160 Hb_001191_060--Hb_001348_160 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_001191_060--Hb_002818_130 Hb_001191_060--Hb_003033_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.398608 1.18224 59.4356 35.0007 0.544807 0.494419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.424609 0.556718 0.104135 1.23528 193.334

CAGE analysis