Hb_000221_140

Information

Type -
Description -
Location Contig221: 181888-198121
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10040g
description POPTRDRAFT_816363; seryl-tRNA synthetase family protein
nr
ID XP_012067914.1
description PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID Q73KB2
description Serine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=serS PE=3 SV=1
trembl
ID A0A067KZ22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15824 PE=3 SV=1
Gene Ontology
ID GO:0005739
description serine--trna mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22778: 193650-197905 , PASA_asmbl_22779: 194131-194232 , PASA_asmbl_22780: 194233-194530
cDNA
(Sanger)
(ID:Location)		 004_E18r.ab1: 198643-200107

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_140 0.0 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_006538_120 0.0617143078 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
3 Hb_001660_120 0.0753639263 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
4 Hb_009775_010 0.077574298 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
5 Hb_000212_440 0.0798990372 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_003038_200 0.082131872 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
7 Hb_005405_020 0.0845617381 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
8 Hb_005127_030 0.0849038582 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_003728_100 0.0866007668 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
10 Hb_001109_050 0.0867301214 - - PREDICTED: ankyrin-1 [Jatropha curcas]
11 Hb_000227_170 0.0883661995 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_009225_020 0.0902492099 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
13 Hb_005539_010 0.0918828417 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
14 Hb_033312_010 0.0920266573 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_031284_070 0.092160893 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
16 Hb_000580_150 0.0940212177 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
17 Hb_005731_160 0.0948443818 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_012150_030 0.0955719137 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_004310_140 0.0967160358 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000207_300 0.0967467983 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000221_140 Hb_000221_140 Hb_006538_120 Hb_006538_120 Hb_000221_140--Hb_006538_120 Hb_001660_120 Hb_001660_120 Hb_000221_140--Hb_001660_120 Hb_009775_010 Hb_009775_010 Hb_000221_140--Hb_009775_010 Hb_000212_440 Hb_000212_440 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_005127_030 Hb_005127_030 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_013405_080 Hb_013405_080 Hb_001660_120--Hb_013405_080 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_000363_060 Hb_000363_060 Hb_001660_120--Hb_000363_060 Hb_000331_130 Hb_000331_130 Hb_001660_120--Hb_000331_130 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010 Hb_000580_150 Hb_000580_150 Hb_009775_010--Hb_000580_150 Hb_000173_250 Hb_000173_250 Hb_009775_010--Hb_000173_250 Hb_009775_010--Hb_001410_070 Hb_009775_010--Hb_001660_120 Hb_003376_230 Hb_003376_230 Hb_000212_440--Hb_003376_230 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_000212_440--Hb_005539_010 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120 Hb_071188_010 Hb_071188_010 Hb_003038_200--Hb_071188_010 Hb_004310_140 Hb_004310_140 Hb_003038_200--Hb_004310_140 Hb_000679_020 Hb_000679_020 Hb_003038_200--Hb_000679_020 Hb_000174_170 Hb_000174_170 Hb_003038_200--Hb_000174_170 Hb_003038_200--Hb_001662_140 Hb_009225_020 Hb_009225_020 Hb_005405_020--Hb_009225_020 Hb_005405_020--Hb_003376_230 Hb_003153_010 Hb_003153_010 Hb_005405_020--Hb_003153_010 Hb_000797_040 Hb_000797_040 Hb_005405_020--Hb_000797_040 Hb_000224_160 Hb_000224_160 Hb_005405_020--Hb_000224_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.91421 2.42294 6.97137 2.92957 3.21431 4.02863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.61634 3.78028 2.15448 3.71176 9.25788

CAGE analysis