Hb_000221_180

Information

Type -
Description -
Location Contig221: 227499-228515
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17320g
description POPTRDRAFT_651250; VQ motif-containing family protein
nr
ID XP_002306566.1
description VQ motif-containing family protein [Populus trichocarpa]
swissprot
ID Q9M9F0
description VQ motif-containing protein 9 OS=Arabidopsis thaliana GN=VQ9 PE=1 SV=1
trembl
ID B9H707
description VQ motif-containing family protein OS=Populus trichocarpa GN=POPTR_0005s17320g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22786: 227461-227736 , PASA_asmbl_22787: 228030-229000
cDNA
(Sanger)
(ID:Location)		 017_O21.ab1: 228223-228855

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_180 0.0 - - VQ motif-containing family protein [Populus trichocarpa]
2 Hb_014006_010 0.0901296041 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
3 Hb_073973_020 0.0902648215 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
4 Hb_000175_270 0.1026251994 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
5 Hb_001496_120 0.1130370727 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
6 Hb_001307_200 0.1141078862 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
7 Hb_013399_090 0.1143186907 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
8 Hb_000243_400 0.115964651 - - PREDICTED: nucleolin-like [Jatropha curcas]
9 Hb_000321_120 0.1181162164 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
10 Hb_000340_360 0.1191581426 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
11 Hb_000731_290 0.1222209472 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_004586_090 0.1226308673 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
13 Hb_000032_020 0.1238346607 - - Centromeric protein E, putative [Ricinus communis]
14 Hb_001430_100 0.1250508002 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000413_250 0.1262732151 - - Cysteine-rich RLK 29 [Theobroma cacao]
16 Hb_001404_090 0.1264967142 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
17 Hb_005695_080 0.1265171341 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
18 Hb_000445_130 0.1301823558 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
19 Hb_005588_120 0.1311150415 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000066_040 0.1335317055 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]

Gene co-expression network

sample Hb_000221_180 Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000221_180--Hb_014006_010 Hb_073973_020 Hb_073973_020 Hb_000221_180--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000221_180--Hb_000175_270 Hb_001496_120 Hb_001496_120 Hb_000221_180--Hb_001496_120 Hb_001307_200 Hb_001307_200 Hb_000221_180--Hb_001307_200 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_014006_010--Hb_013399_090 Hb_000340_360 Hb_000340_360 Hb_014006_010--Hb_000340_360 Hb_004586_090 Hb_004586_090 Hb_014006_010--Hb_004586_090 Hb_002078_470 Hb_002078_470 Hb_014006_010--Hb_002078_470 Hb_000154_130 Hb_000154_130 Hb_014006_010--Hb_000154_130 Hb_073973_020--Hb_001307_200 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_001268_300 Hb_001268_300 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_073973_020--Hb_001496_120 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000175_270--Hb_000340_360 Hb_000418_150 Hb_000418_150 Hb_001496_120--Hb_000418_150 Hb_001496_120--Hb_001307_200 Hb_000438_020 Hb_000438_020 Hb_001496_120--Hb_000438_020 Hb_002888_060 Hb_002888_060 Hb_001496_120--Hb_002888_060 Hb_004096_220 Hb_004096_220 Hb_001307_200--Hb_004096_220 Hb_001307_200--Hb_001268_300 Hb_001307_200--Hb_002888_040 Hb_001307_200--Hb_000417_410 Hb_013399_090--Hb_000340_360 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_001408_120 Hb_001408_120 Hb_013399_090--Hb_001408_120 Hb_013399_090--Hb_004586_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83925 22.1935 9.54652 11.6369 3.12243 3.28553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98502 2.26379 2.01378 15.7996 25.9016

CAGE analysis