Hb_000221_210

Information

Type -
Description -
Location Contig221: 241621-244472
Sequence    

Annotation

kegg
ID rcu:RCOM_0767560
description Serine/threonine-protein kinase SAPK1, putative (EC:2.7.11.1)
nr
ID XP_007018726.1
description Kinase superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID A2YNT8
description Serine/threonine-protein kinase SAPK2 OS=Oryza sativa subsp. indica GN=SAPK2 PE=2 SV=2
trembl
ID A0A061FFV2
description Kinase superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_034866 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase sapk2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22791: 241742-241915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_210 0.0 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
2 Hb_000696_340 0.0604922947 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
3 Hb_000086_060 0.0874640438 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
4 Hb_000445_180 0.0901465175 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
5 Hb_002137_020 0.0935663206 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_005941_040 0.0939503115 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
7 Hb_003057_100 0.0947301293 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
8 Hb_000679_010 0.0952508413 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
9 Hb_004223_280 0.0960418122 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
10 Hb_000329_630 0.0991271396 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
11 Hb_000638_080 0.1008049111 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
12 Hb_005054_290 0.101115087 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
13 Hb_000031_060 0.1026397235 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
14 Hb_001439_100 0.1031787564 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
15 Hb_000000_460 0.1031891388 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
16 Hb_002685_170 0.103251628 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
17 Hb_012022_030 0.104597553 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
18 Hb_028995_040 0.1052037252 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
19 Hb_005653_060 0.1064785289 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
20 Hb_000853_420 0.1074262254 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000221_210 Hb_000221_210 Hb_000696_340 Hb_000696_340 Hb_000221_210--Hb_000696_340 Hb_000086_060 Hb_000086_060 Hb_000221_210--Hb_000086_060 Hb_000445_180 Hb_000445_180 Hb_000221_210--Hb_000445_180 Hb_002137_020 Hb_002137_020 Hb_000221_210--Hb_002137_020 Hb_005941_040 Hb_005941_040 Hb_000221_210--Hb_005941_040 Hb_003057_100 Hb_003057_100 Hb_000221_210--Hb_003057_100 Hb_000696_340--Hb_002137_020 Hb_005329_020 Hb_005329_020 Hb_000696_340--Hb_005329_020 Hb_000329_630 Hb_000329_630 Hb_000696_340--Hb_000329_630 Hb_004223_280 Hb_004223_280 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_000086_060--Hb_005941_040 Hb_000261_440 Hb_000261_440 Hb_000086_060--Hb_000261_440 Hb_000987_120 Hb_000987_120 Hb_000086_060--Hb_000987_120 Hb_005653_060 Hb_005653_060 Hb_000086_060--Hb_005653_060 Hb_000212_350 Hb_000212_350 Hb_000086_060--Hb_000212_350 Hb_000031_060 Hb_000031_060 Hb_000445_180--Hb_000031_060 Hb_000445_180--Hb_005941_040 Hb_009615_150 Hb_009615_150 Hb_000445_180--Hb_009615_150 Hb_000224_170 Hb_000224_170 Hb_000445_180--Hb_000224_170 Hb_126643_020 Hb_126643_020 Hb_000445_180--Hb_126643_020 Hb_001623_420 Hb_001623_420 Hb_000445_180--Hb_001623_420 Hb_002137_020--Hb_004223_280 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_000571_120 Hb_000571_120 Hb_002137_020--Hb_000571_120 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_002284_010 Hb_002284_010 Hb_005941_040--Hb_002284_010 Hb_002163_020 Hb_002163_020 Hb_005941_040--Hb_002163_020 Hb_000635_180 Hb_000635_180 Hb_005941_040--Hb_000635_180 Hb_028995_040 Hb_028995_040 Hb_005941_040--Hb_028995_040 Hb_000705_210 Hb_000705_210 Hb_005941_040--Hb_000705_210 Hb_000032_270 Hb_000032_270 Hb_003057_100--Hb_000032_270 Hb_032202_190 Hb_032202_190 Hb_003057_100--Hb_032202_190 Hb_029866_090 Hb_029866_090 Hb_003057_100--Hb_029866_090 Hb_005305_080 Hb_005305_080 Hb_003057_100--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_003057_100--Hb_000510_130 Hb_000059_330 Hb_000059_330 Hb_003057_100--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.89656 8.008 3.12624 3.97821 7.12863 7.15787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9263 9.81069 9.01218 5.93807 3.09556

CAGE analysis