Hb_000221_220

Information

Type -
Description -
Location Contig221: 249731-252818
Sequence    

Annotation

kegg
ID tcc:TCM_034867
description Ribosomal protein S6e
nr
ID XP_012069155.1
description PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
swissprot
ID Q9M3V8
description 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1
trembl
ID A0A067L8U3
description 40S ribosomal protein S6 OS=Jatropha curcas GN=JCGZ_24919 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22792: 248487-252788
cDNA
(Sanger)
(ID:Location)		 037_C02.ab1: 248489-252432 , 037_H08.ab1: 248487-252601 , 039_H03.ab1: 251954-252565 , 044_G21.ab1: 248513-252434 , 048_O13.ab1: 248487-252585

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_220 0.0 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
2 Hb_001828_090 0.0609597073 - - prohibitin, putative [Ricinus communis]
3 Hb_002603_100 0.0684986554 - - ATATH9, putative [Ricinus communis]
4 Hb_007426_230 0.0709855182 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
5 Hb_012762_050 0.0727083724 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
6 Hb_004195_160 0.0748328525 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
7 Hb_011571_020 0.0762151266 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
8 Hb_003018_200 0.0783713712 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
9 Hb_027472_180 0.0785634403 - - hypothetical protein L484_016229 [Morus notabilis]
10 Hb_000473_040 0.0796856728 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
11 Hb_003050_080 0.080871723 - - 40S ribosomal protein S14, putative [Ricinus communis]
12 Hb_011360_140 0.0816370481 - - 40S ribosomal protein S19, putative [Ricinus communis]
13 Hb_007101_150 0.08309124 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
14 Hb_003055_120 0.0835393793 - - Protein C20orf11, putative [Ricinus communis]
15 Hb_063716_050 0.0862624143 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
16 Hb_007101_130 0.0872961618 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011571_010 0.087343512 - - Metal tolerance protein C4, putative [Ricinus communis]
18 Hb_000883_050 0.0880655702 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
19 Hb_000015_080 0.0882684845 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
20 Hb_000703_140 0.0886591738 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_000221_220 Hb_000221_220 Hb_001828_090 Hb_001828_090 Hb_000221_220--Hb_001828_090 Hb_002603_100 Hb_002603_100 Hb_000221_220--Hb_002603_100 Hb_007426_230 Hb_007426_230 Hb_000221_220--Hb_007426_230 Hb_012762_050 Hb_012762_050 Hb_000221_220--Hb_012762_050 Hb_004195_160 Hb_004195_160 Hb_000221_220--Hb_004195_160 Hb_011571_020 Hb_011571_020 Hb_000221_220--Hb_011571_020 Hb_007101_150 Hb_007101_150 Hb_001828_090--Hb_007101_150 Hb_011360_140 Hb_011360_140 Hb_001828_090--Hb_011360_140 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001512_070 Hb_001512_070 Hb_001828_090--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001828_090--Hb_000684_090 Hb_023386_080 Hb_023386_080 Hb_002603_100--Hb_023386_080 Hb_000376_050 Hb_000376_050 Hb_002603_100--Hb_000376_050 Hb_022250_040 Hb_022250_040 Hb_002603_100--Hb_022250_040 Hb_000956_010 Hb_000956_010 Hb_002603_100--Hb_000956_010 Hb_001243_050 Hb_001243_050 Hb_002603_100--Hb_001243_050 Hb_001671_020 Hb_001671_020 Hb_002603_100--Hb_001671_020 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180 Hb_135545_010 Hb_135545_010 Hb_012762_050--Hb_135545_010 Hb_000473_040 Hb_000473_040 Hb_012762_050--Hb_000473_040 Hb_012762_050--Hb_001512_070 Hb_002007_060 Hb_002007_060 Hb_012762_050--Hb_002007_060 Hb_012762_050--Hb_011571_020 Hb_004195_160--Hb_000398_180 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_011571_020--Hb_011360_140 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_005993_040 Hb_005993_040 Hb_011571_020--Hb_005993_040 Hb_001301_160 Hb_001301_160 Hb_011571_020--Hb_001301_160 Hb_005332_070 Hb_005332_070 Hb_011571_020--Hb_005332_070 Hb_011571_020--Hb_000473_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
245.271 78.0588 103.989 66.746 241.857 256.146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
202.908 359.841 277.563 99.1668 41.7378

CAGE analysis