Hb_000221_240

Information

Type -
Description -
Location Contig221: 265096-269670
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09950g
description POPTRDRAFT_830232; 2-dehydro-3-deoxyphosphoheptonate aldolase family protein
nr
ID AFY09700.1
description chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
swissprot
ID P27608
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1
trembl
ID A0A0A6Z9Z1
description Chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase OS=Hevea brasiliensis GN=DAHPs PE=4 SV=1
Gene Ontology
ID GO:0003849
description phospho-2-dehydro-3-deoxyheptonate aldolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22805: 265191-269586 , PASA_asmbl_22806: 265802-266137
cDNA
(Sanger)
(ID:Location)		 032_A14.ab1: 268714-269586 , 039_M14.ab1: 269207-269559 , 042_O24.ab1: 268711-269586 , 051_M04.ab1: 268647-269575

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_240 0.0 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
2 Hb_002093_060 0.1012154878 - - phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_001104_100 0.1128029999 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
4 Hb_135757_020 0.1135181715 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
5 Hb_001957_010 0.1195549113 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
6 Hb_001104_230 0.1208737657 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
7 Hb_001769_060 0.1212172238 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
8 Hb_001476_060 0.1254294933 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
9 Hb_001946_310 0.1255632963 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
10 Hb_012678_020 0.1261014322 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
11 Hb_002631_130 0.1266102589 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
12 Hb_002686_200 0.1301209385 - - glucosidase II beta subunit, putative [Ricinus communis]
13 Hb_008226_070 0.1302471436 - - PREDICTED: expansin-A8 [Jatropha curcas]
14 Hb_000115_150 0.1320351636 - - PREDICTED: IST1 homolog [Jatropha curcas]
15 Hb_000197_190 0.1325238074 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
16 Hb_003988_050 0.1327644297 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
17 Hb_001318_050 0.1345045765 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_005648_010 0.1352213462 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_009193_090 0.135544873 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
20 Hb_007383_020 0.1388999686 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000221_240 Hb_000221_240 Hb_002093_060 Hb_002093_060 Hb_000221_240--Hb_002093_060 Hb_001104_100 Hb_001104_100 Hb_000221_240--Hb_001104_100 Hb_135757_020 Hb_135757_020 Hb_000221_240--Hb_135757_020 Hb_001957_010 Hb_001957_010 Hb_000221_240--Hb_001957_010 Hb_001104_230 Hb_001104_230 Hb_000221_240--Hb_001104_230 Hb_001769_060 Hb_001769_060 Hb_000221_240--Hb_001769_060 Hb_005648_010 Hb_005648_010 Hb_002093_060--Hb_005648_010 Hb_002301_100 Hb_002301_100 Hb_002093_060--Hb_002301_100 Hb_000120_370 Hb_000120_370 Hb_002093_060--Hb_000120_370 Hb_002093_060--Hb_001957_010 Hb_000115_150 Hb_000115_150 Hb_002093_060--Hb_000115_150 Hb_012678_020 Hb_012678_020 Hb_002093_060--Hb_012678_020 Hb_001104_100--Hb_000115_150 Hb_001085_240 Hb_001085_240 Hb_001104_100--Hb_001085_240 Hb_002675_140 Hb_002675_140 Hb_001104_100--Hb_002675_140 Hb_001104_100--Hb_001104_230 Hb_000094_210 Hb_000094_210 Hb_001104_100--Hb_000094_210 Hb_001104_100--Hb_002093_060 Hb_004094_020 Hb_004094_020 Hb_135757_020--Hb_004094_020 Hb_001021_010 Hb_001021_010 Hb_135757_020--Hb_001021_010 Hb_004330_080 Hb_004330_080 Hb_135757_020--Hb_004330_080 Hb_000824_050 Hb_000824_050 Hb_135757_020--Hb_000824_050 Hb_019280_020 Hb_019280_020 Hb_135757_020--Hb_019280_020 Hb_065968_010 Hb_065968_010 Hb_001957_010--Hb_065968_010 Hb_003605_020 Hb_003605_020 Hb_001957_010--Hb_003605_020 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001957_010--Hb_000395_280 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030 Hb_000025_190 Hb_000025_190 Hb_001104_230--Hb_000025_190 Hb_004429_090 Hb_004429_090 Hb_001104_230--Hb_004429_090 Hb_001221_020 Hb_001221_020 Hb_001104_230--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_001104_230--Hb_003776_060 Hb_062537_010 Hb_062537_010 Hb_001104_230--Hb_062537_010 Hb_004880_150 Hb_004880_150 Hb_001104_230--Hb_004880_150 Hb_002811_280 Hb_002811_280 Hb_001769_060--Hb_002811_280 Hb_000110_050 Hb_000110_050 Hb_001769_060--Hb_000110_050 Hb_001623_190 Hb_001623_190 Hb_001769_060--Hb_001623_190 Hb_001946_310 Hb_001946_310 Hb_001769_060--Hb_001946_310 Hb_003044_080 Hb_003044_080 Hb_001769_060--Hb_003044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.6909 32.5349 102.019 261.801 47.3709 47.4023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.8455 62.8275 93.3929 260.961 120.56

CAGE analysis