Hb_000221_250

Information

Type -
Description -
Location Contig221: 280578-282878
Sequence    

Annotation

kegg
ID rcu:RCOM_1036630
description ubiquitin-protein ligase, putative
nr
ID KDP41407.1
description hypothetical protein JCGZ_15814 [Jatropha curcas]
swissprot
ID Q9ZPE4
description F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1
trembl
ID A0A067KZ16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15814 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box protein fbw2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22807: 280557-280676 , PASA_asmbl_22808: 281163-282748 , PASA_asmbl_22809: 280734-282728
cDNA
(Sanger)
(ID:Location)		 010_F17.ab1: 281186-282748 , 038_J22.ab1: 281875-282661

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_250 0.0 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
2 Hb_000020_150 0.0706618344 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
3 Hb_003097_170 0.0801143239 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
4 Hb_011716_070 0.0817438011 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
5 Hb_001860_030 0.0843830249 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
6 Hb_004046_050 0.0865667817 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
7 Hb_007123_030 0.0865922245 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
8 Hb_002784_020 0.0869647239 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
9 Hb_000441_150 0.0906579794 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_063716_100 0.0911059117 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
11 Hb_001357_250 0.0915933976 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
12 Hb_000907_110 0.0929632593 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
13 Hb_010661_050 0.0938296548 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Fragaria vesca subsp. vesca]
14 Hb_004689_050 0.0940826696 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001635_090 0.0940965954 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
16 Hb_001252_120 0.0946018382 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
17 Hb_000227_090 0.0948092727 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
18 Hb_015175_050 0.0952807636 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
19 Hb_001946_010 0.0960877323 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_028872_090 0.0967952546 - - PREDICTED: urease [Jatropha curcas]

Gene co-expression network

sample Hb_000221_250 Hb_000221_250 Hb_000020_150 Hb_000020_150 Hb_000221_250--Hb_000020_150 Hb_003097_170 Hb_003097_170 Hb_000221_250--Hb_003097_170 Hb_011716_070 Hb_011716_070 Hb_000221_250--Hb_011716_070 Hb_001860_030 Hb_001860_030 Hb_000221_250--Hb_001860_030 Hb_004046_050 Hb_004046_050 Hb_000221_250--Hb_004046_050 Hb_007123_030 Hb_007123_030 Hb_000221_250--Hb_007123_030 Hb_028872_090 Hb_028872_090 Hb_000020_150--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_000020_150--Hb_000120_430 Hb_063716_100 Hb_063716_100 Hb_000020_150--Hb_063716_100 Hb_033834_030 Hb_033834_030 Hb_000020_150--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_000020_150--Hb_183612_040 Hb_004235_080 Hb_004235_080 Hb_003097_170--Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_003097_170--Hb_000923_080 Hb_003097_170--Hb_000020_150 Hb_004429_100 Hb_004429_100 Hb_003097_170--Hb_004429_100 Hb_001030_110 Hb_001030_110 Hb_003097_170--Hb_001030_110 Hb_015175_050 Hb_015175_050 Hb_011716_070--Hb_015175_050 Hb_002344_060 Hb_002344_060 Hb_011716_070--Hb_002344_060 Hb_011716_070--Hb_001860_030 Hb_002400_410 Hb_002400_410 Hb_011716_070--Hb_002400_410 Hb_004324_130 Hb_004324_130 Hb_011716_070--Hb_004324_130 Hb_000062_270 Hb_000062_270 Hb_001860_030--Hb_000062_270 Hb_028512_020 Hb_028512_020 Hb_001860_030--Hb_028512_020 Hb_013399_020 Hb_013399_020 Hb_001860_030--Hb_013399_020 Hb_000981_030 Hb_000981_030 Hb_001860_030--Hb_000981_030 Hb_001860_030--Hb_004324_130 Hb_001635_090 Hb_001635_090 Hb_001860_030--Hb_001635_090 Hb_003693_070 Hb_003693_070 Hb_004046_050--Hb_003693_070 Hb_004046_050--Hb_000020_150 Hb_000345_380 Hb_000345_380 Hb_004046_050--Hb_000345_380 Hb_000039_220 Hb_000039_220 Hb_004046_050--Hb_000039_220 Hb_006827_020 Hb_006827_020 Hb_004046_050--Hb_006827_020 Hb_001221_100 Hb_001221_100 Hb_004046_050--Hb_001221_100 Hb_001946_340 Hb_001946_340 Hb_007123_030--Hb_001946_340 Hb_001343_040 Hb_001343_040 Hb_007123_030--Hb_001343_040 Hb_001377_160 Hb_001377_160 Hb_007123_030--Hb_001377_160 Hb_000130_410 Hb_000130_410 Hb_007123_030--Hb_000130_410 Hb_003498_120 Hb_003498_120 Hb_007123_030--Hb_003498_120 Hb_001235_140 Hb_001235_140 Hb_007123_030--Hb_001235_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.735 66.41 56.8205 47.9293 60.5436 74.8217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.7396 45.6598 43.0464 90.5288 32.647

CAGE analysis