Hb_000221_270

Information

Type -
Description -
Location Contig221: 297905-299246
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17260g
description POPTRDRAFT_651263, POPTRDRAFT_760756; hypothetical protein
nr
ID KDP41406.1
description hypothetical protein JCGZ_15813 [Jatropha curcas]
swissprot
ID Q2KJ44
description Serine/threonine-protein phosphatase 2A activator OS=Bos taurus GN=PPP2R4 PE=2 SV=1
trembl
ID A0A067KYX8
description Serine/threonine-protein phosphatase 2A activator OS=Jatropha curcas GN=JCGZ_15813 PE=3 SV=1
Gene Ontology
ID GO:0005737
description serine threonine-protein phosphatase 2a activator-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22810: 296883-299273 , PASA_asmbl_22812: 300165-300431
cDNA
(Sanger)
(ID:Location)		 006_H22.ab1: 298576-299273 , 046_I01.ab1: 298551-299273 , 049_I01.ab1: 298749-299273

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_270 0.0 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
2 Hb_008066_010 0.0818113383 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
3 Hb_000069_460 0.0874985789 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
4 Hb_005548_010 0.0934281601 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
5 Hb_002902_110 0.0998412533 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
6 Hb_000051_110 0.102105407 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010710_030 0.1040874289 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
8 Hb_001329_300 0.1064772878 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
9 Hb_000110_160 0.1092391024 - - conserved hypothetical protein [Ricinus communis]
10 Hb_143629_040 0.109601723 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001881_020 0.1122758882 - - clathrin binding protein, putative [Ricinus communis]
12 Hb_000661_170 0.114798501 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_020178_070 0.115771906 - - Protein Z, putative [Ricinus communis]
14 Hb_000115_060 0.1178126897 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
15 Hb_001789_090 0.1182945703 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
16 Hb_003893_010 0.1185868996 - - hypothetical protein M569_16374 [Genlisea aurea]
17 Hb_015306_020 0.1201082 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
18 Hb_000840_210 0.1204383817 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
19 Hb_000635_220 0.12044784 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
20 Hb_002027_120 0.1215772036 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]

Gene co-expression network

sample Hb_000221_270 Hb_000221_270 Hb_008066_010 Hb_008066_010 Hb_000221_270--Hb_008066_010 Hb_000069_460 Hb_000069_460 Hb_000221_270--Hb_000069_460 Hb_005548_010 Hb_005548_010 Hb_000221_270--Hb_005548_010 Hb_002902_110 Hb_002902_110 Hb_000221_270--Hb_002902_110 Hb_000051_110 Hb_000051_110 Hb_000221_270--Hb_000051_110 Hb_010710_030 Hb_010710_030 Hb_000221_270--Hb_010710_030 Hb_000110_160 Hb_000110_160 Hb_008066_010--Hb_000110_160 Hb_001329_300 Hb_001329_300 Hb_008066_010--Hb_001329_300 Hb_008066_010--Hb_000069_460 Hb_008066_010--Hb_010710_030 Hb_000567_260 Hb_000567_260 Hb_008066_010--Hb_000567_260 Hb_000069_460--Hb_000110_160 Hb_000069_460--Hb_001329_300 Hb_000069_460--Hb_000051_110 Hb_000446_090 Hb_000446_090 Hb_000069_460--Hb_000446_090 Hb_005625_020 Hb_005625_020 Hb_005548_010--Hb_005625_020 Hb_005548_010--Hb_000069_460 Hb_003687_240 Hb_003687_240 Hb_005548_010--Hb_003687_240 Hb_001635_060 Hb_001635_060 Hb_005548_010--Hb_001635_060 Hb_000365_020 Hb_000365_020 Hb_005548_010--Hb_000365_020 Hb_000914_070 Hb_000914_070 Hb_002902_110--Hb_000914_070 Hb_012490_040 Hb_012490_040 Hb_002902_110--Hb_012490_040 Hb_002154_050 Hb_002154_050 Hb_002902_110--Hb_002154_050 Hb_004055_140 Hb_004055_140 Hb_002902_110--Hb_004055_140 Hb_071736_010 Hb_071736_010 Hb_002902_110--Hb_071736_010 Hb_000051_110--Hb_008066_010 Hb_001604_010 Hb_001604_010 Hb_000051_110--Hb_001604_010 Hb_009111_050 Hb_009111_050 Hb_000051_110--Hb_009111_050 Hb_000190_140 Hb_000190_140 Hb_000051_110--Hb_000190_140 Hb_000115_060 Hb_000115_060 Hb_010710_030--Hb_000115_060 Hb_004223_130 Hb_004223_130 Hb_010710_030--Hb_004223_130 Hb_002681_110 Hb_002681_110 Hb_010710_030--Hb_002681_110 Hb_000696_110 Hb_000696_110 Hb_010710_030--Hb_000696_110 Hb_001671_080 Hb_001671_080 Hb_010710_030--Hb_001671_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.524 21.1514 6.68955 23.0936 43.4509 86.5003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.4262 50.9383 115.07 60.2197 10.6794

CAGE analysis