Hb_000223_050

Information

Type -
Description -
Location Contig223: 52557-59898
Sequence    

Annotation

kegg
ID rcu:RCOM_1075040
description Early nodulin 16 precursor, putative
nr
ID XP_012081249.1
description PREDICTED: endochitinase A-like [Jatropha curcas]
swissprot
ID P29602
description Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3
trembl
ID B9SMH4
description Early nodulin 16, putative OS=Ricinus communis GN=RCOM_1075040 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23085: 58327-60040 , PASA_asmbl_23086: 58629-58915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000223_050 0.0 - - PREDICTED: endochitinase A-like [Jatropha curcas]
2 Hb_000512_080 0.1058900929 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000075_110 0.1203899185 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_006970_150 0.1216210816 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
5 Hb_001481_030 0.122558813 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_165404_010 0.1281138597 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
7 Hb_002085_070 0.1298967268 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000030_260 0.13468942 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
9 Hb_011791_010 0.1375712985 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
10 Hb_008948_080 0.1406029105 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
11 Hb_000265_020 0.143591256 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
12 Hb_006634_080 0.1464022599 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
13 Hb_000120_070 0.1477779859 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
14 Hb_004230_060 0.1513622722 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
15 Hb_000252_080 0.1517714639 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
16 Hb_157980_010 0.1524619564 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
17 Hb_001514_100 0.153827532 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
18 Hb_000676_030 0.1545009148 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
19 Hb_000343_280 0.154589488 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
20 Hb_007765_140 0.1564077618 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000223_050 Hb_000223_050 Hb_000512_080 Hb_000512_080 Hb_000223_050--Hb_000512_080 Hb_000075_110 Hb_000075_110 Hb_000223_050--Hb_000075_110 Hb_006970_150 Hb_006970_150 Hb_000223_050--Hb_006970_150 Hb_001481_030 Hb_001481_030 Hb_000223_050--Hb_001481_030 Hb_165404_010 Hb_165404_010 Hb_000223_050--Hb_165404_010 Hb_002085_070 Hb_002085_070 Hb_000223_050--Hb_002085_070 Hb_003636_010 Hb_003636_010 Hb_000512_080--Hb_003636_010 Hb_152718_010 Hb_152718_010 Hb_000512_080--Hb_152718_010 Hb_001514_100 Hb_001514_100 Hb_000512_080--Hb_001514_100 Hb_000265_020 Hb_000265_020 Hb_000512_080--Hb_000265_020 Hb_000512_080--Hb_002085_070 Hb_000075_110--Hb_165404_010 Hb_007765_140 Hb_007765_140 Hb_000075_110--Hb_007765_140 Hb_000598_020 Hb_000598_020 Hb_000075_110--Hb_000598_020 Hb_000120_070 Hb_000120_070 Hb_000075_110--Hb_000120_070 Hb_008215_010 Hb_008215_010 Hb_000075_110--Hb_008215_010 Hb_000075_110--Hb_006970_150 Hb_033045_010 Hb_033045_010 Hb_006970_150--Hb_033045_010 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_006970_150--Hb_000120_070 Hb_006970_150--Hb_000265_020 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080 Hb_000720_110 Hb_000720_110 Hb_001481_030--Hb_000720_110 Hb_001424_080 Hb_001424_080 Hb_001481_030--Hb_001424_080 Hb_005306_040 Hb_005306_040 Hb_001481_030--Hb_005306_040 Hb_034342_010 Hb_034342_010 Hb_001481_030--Hb_034342_010 Hb_001481_030--Hb_000512_080 Hb_165404_010--Hb_007765_140 Hb_065230_010 Hb_065230_010 Hb_165404_010--Hb_065230_010 Hb_165404_010--Hb_008215_010 Hb_075449_040 Hb_075449_040 Hb_165404_010--Hb_075449_040 Hb_165404_010--Hb_000120_070 Hb_002085_070--Hb_001514_100 Hb_000521_290 Hb_000521_290 Hb_002085_070--Hb_000521_290 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_000002_100 Hb_000002_100 Hb_002085_070--Hb_000002_100 Hb_012018_020 Hb_012018_020 Hb_002085_070--Hb_012018_020 Hb_002085_070--Hb_000265_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.154806 91.9848 26.2422 10.2684 0 0.0263268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.57915 1.56963 0.256353 53.8359 3.03585

CAGE analysis