Hb_000223_090

Information

Type -
Description -
Location Contig223: 95309-100266
Sequence    

Annotation

kegg
ID rcu:RCOM_1075010
description Blue copper protein precursor, putative
nr
ID XP_002527190.1
description Blue copper protein precursor, putative [Ricinus communis]
swissprot
ID P93328
description Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1
trembl
ID B9SMH1
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_1075010 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000223_090 0.0 - - Blue copper protein precursor, putative [Ricinus communis]
2 Hb_005348_050 0.0396824143 - - beta-galactosidase, putative [Ricinus communis]
3 Hb_001894_100 0.0754660006 - - PREDICTED: kininogen-1-like [Jatropha curcas]
4 Hb_001790_060 0.0831256479 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
5 Hb_008253_050 0.0892964442 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
6 Hb_029386_010 0.0935185683 - - RALF-LIKE 27 family protein [Populus trichocarpa]
7 Hb_133076_010 0.0936303464 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
8 Hb_004896_030 0.1062111015 - - hypothetical protein VITISV_007475 [Vitis vinifera]
9 Hb_005539_150 0.1102898551 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
10 Hb_011618_010 0.1104433543 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
11 Hb_002740_060 0.1122179399 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
12 Hb_004459_050 0.1145162499 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000627_110 0.1166883739 - - cellulose synthase, putative [Ricinus communis]
14 Hb_000477_090 0.116775794 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
15 Hb_002659_050 0.1176845913 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
16 Hb_003358_030 0.1208135191 - - ankyrin-kinase, putative [Ricinus communis]
17 Hb_006133_010 0.1238046943 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
18 Hb_128750_010 0.1266253014 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_000589_410 0.1308957685 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
20 Hb_006573_240 0.1329204337 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000223_090 Hb_000223_090 Hb_005348_050 Hb_005348_050 Hb_000223_090--Hb_005348_050 Hb_001894_100 Hb_001894_100 Hb_000223_090--Hb_001894_100 Hb_001790_060 Hb_001790_060 Hb_000223_090--Hb_001790_060 Hb_008253_050 Hb_008253_050 Hb_000223_090--Hb_008253_050 Hb_029386_010 Hb_029386_010 Hb_000223_090--Hb_029386_010 Hb_133076_010 Hb_133076_010 Hb_000223_090--Hb_133076_010 Hb_005348_050--Hb_001894_100 Hb_011618_010 Hb_011618_010 Hb_005348_050--Hb_011618_010 Hb_005348_050--Hb_001790_060 Hb_002659_050 Hb_002659_050 Hb_005348_050--Hb_002659_050 Hb_005348_050--Hb_008253_050 Hb_001894_100--Hb_001790_060 Hb_001894_100--Hb_008253_050 Hb_001894_100--Hb_133076_010 Hb_003151_020 Hb_003151_020 Hb_001894_100--Hb_003151_020 Hb_001790_060--Hb_133076_010 Hb_000268_050 Hb_000268_050 Hb_001790_060--Hb_000268_050 Hb_003528_100 Hb_003528_100 Hb_001790_060--Hb_003528_100 Hb_041139_010 Hb_041139_010 Hb_008253_050--Hb_041139_010 Hb_008253_050--Hb_011618_010 Hb_005539_150 Hb_005539_150 Hb_008253_050--Hb_005539_150 Hb_003358_030 Hb_003358_030 Hb_029386_010--Hb_003358_030 Hb_029386_010--Hb_005539_150 Hb_000477_090 Hb_000477_090 Hb_029386_010--Hb_000477_090 Hb_000627_110 Hb_000627_110 Hb_029386_010--Hb_000627_110 Hb_004896_030 Hb_004896_030 Hb_029386_010--Hb_004896_030 Hb_000540_080 Hb_000540_080 Hb_133076_010--Hb_000540_080 Hb_000363_070 Hb_000363_070 Hb_133076_010--Hb_000363_070 Hb_045260_010 Hb_045260_010 Hb_133076_010--Hb_045260_010 Hb_133076_010--Hb_000268_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0512485 0.0791053 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0165316 0.251695

CAGE analysis