Hb_000223_150

Information

Type -
Description -
Location Contig223: 165093-166746
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02060g
description POPTRDRAFT_807852; hypothetical protein
nr
ID XP_011003872.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
swissprot
ID Q5G1T1
description Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1
trembl
ID B9IDW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s02060g PE=4 SV=2
Gene Ontology
ID GO:0016772
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000223_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
2 Hb_005488_010 0.071161609 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008289_060 0.0731549577 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
4 Hb_006846_110 0.0762630341 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
5 Hb_004951_040 0.078613084 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
6 Hb_005532_060 0.0841024948 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
7 Hb_131864_040 0.0848362553 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
8 Hb_003018_190 0.086084972 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
9 Hb_000030_100 0.0874963767 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
10 Hb_001366_200 0.0919229494 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002603_160 0.0926627476 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
12 Hb_055062_030 0.0935111024 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
13 Hb_008453_090 0.0943394996 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
14 Hb_000059_220 0.0956737182 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
15 Hb_000671_150 0.0960193008 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
16 Hb_001158_140 0.0962752463 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
17 Hb_000836_070 0.096608767 - - protein binding protein, putative [Ricinus communis]
18 Hb_016065_010 0.0978370797 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
19 Hb_003266_130 0.0988606251 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
20 Hb_001616_060 0.1013674119 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000223_150 Hb_000223_150 Hb_005488_010 Hb_005488_010 Hb_000223_150--Hb_005488_010 Hb_008289_060 Hb_008289_060 Hb_000223_150--Hb_008289_060 Hb_006846_110 Hb_006846_110 Hb_000223_150--Hb_006846_110 Hb_004951_040 Hb_004951_040 Hb_000223_150--Hb_004951_040 Hb_005532_060 Hb_005532_060 Hb_000223_150--Hb_005532_060 Hb_131864_040 Hb_131864_040 Hb_000223_150--Hb_131864_040 Hb_016065_010 Hb_016065_010 Hb_005488_010--Hb_016065_010 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_055062_030 Hb_055062_030 Hb_005488_010--Hb_055062_030 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_005488_010--Hb_008289_060 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_008289_060--Hb_004951_040 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_006846_110--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_006846_110--Hb_003018_190 Hb_007747_200 Hb_007747_200 Hb_006846_110--Hb_007747_200 Hb_002603_160 Hb_002603_160 Hb_006846_110--Hb_002603_160 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090 Hb_004951_040--Hb_008453_090 Hb_004951_040--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_004951_040--Hb_003018_200 Hb_005333_130 Hb_005333_130 Hb_004951_040--Hb_005333_130 Hb_000457_150 Hb_000457_150 Hb_005532_060--Hb_000457_150 Hb_178968_110 Hb_178968_110 Hb_005532_060--Hb_178968_110 Hb_005532_060--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_005532_060--Hb_003266_130 Hb_005532_060--Hb_005488_010 Hb_131864_040--Hb_002603_160 Hb_131864_040--Hb_003018_190 Hb_131864_040--Hb_016065_010 Hb_131864_040--Hb_005488_010 Hb_131864_040--Hb_055062_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31631 0.496642 0.126367 0.244166 0.891525 1.35976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69831 2.24457 2.65304 0.640629 0.557244

CAGE analysis