Hb_000223_170

Information

Type -
Description -
Location Contig223: 192571-212841
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23087: 192584-200577 , PASA_asmbl_23088: 192988-196567 , PASA_asmbl_23089: 192649-194589 , PASA_asmbl_23090: 201025-201492 , PASA_asmbl_23091: 202245-202455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000223_170 0.0 - - -
2 Hb_000369_120 0.1426468938 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
3 Hb_003352_040 0.1527853099 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
4 Hb_000125_010 0.1557952303 transcription factor TF Family: mTERF -
5 Hb_000340_520 0.1597291369 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
6 Hb_003688_110 0.1619258927 - - -
7 Hb_041205_010 0.1658133755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000215_200 0.1672375992 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
9 Hb_006277_110 0.1705074002 - - protein with unknown function [Ricinus communis]
10 Hb_001969_020 0.1764496532 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
11 Hb_030827_070 0.1765951093 - - PREDICTED: transmembrane protein 161B [Jatropha curcas]
12 Hb_000733_080 0.1786842865 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
13 Hb_000210_240 0.1811421101 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
14 Hb_082006_010 0.1816218593 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027760_020 0.1816316715 - - hypothetical protein M569_04462, partial [Genlisea aurea]
16 Hb_002078_260 0.1842713103 - - unknown [Populus trichocarpa]
17 Hb_000635_070 0.1849715395 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
18 Hb_012653_040 0.1880128339 - - UV-induced protein uvi31, putative [Ricinus communis]
19 Hb_030982_020 0.1885812462 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
20 Hb_005694_020 0.1897253255 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]

Gene co-expression network

sample Hb_000223_170 Hb_000223_170 Hb_000369_120 Hb_000369_120 Hb_000223_170--Hb_000369_120 Hb_003352_040 Hb_003352_040 Hb_000223_170--Hb_003352_040 Hb_000125_010 Hb_000125_010 Hb_000223_170--Hb_000125_010 Hb_000340_520 Hb_000340_520 Hb_000223_170--Hb_000340_520 Hb_003688_110 Hb_003688_110 Hb_000223_170--Hb_003688_110 Hb_041205_010 Hb_041205_010 Hb_000223_170--Hb_041205_010 Hb_027760_020 Hb_027760_020 Hb_000369_120--Hb_027760_020 Hb_001969_020 Hb_001969_020 Hb_000369_120--Hb_001969_020 Hb_010931_140 Hb_010931_140 Hb_000369_120--Hb_010931_140 Hb_000240_100 Hb_000240_100 Hb_000369_120--Hb_000240_100 Hb_010577_010 Hb_010577_010 Hb_000369_120--Hb_010577_010 Hb_000083_170 Hb_000083_170 Hb_003352_040--Hb_000083_170 Hb_037887_010 Hb_037887_010 Hb_003352_040--Hb_037887_010 Hb_002259_160 Hb_002259_160 Hb_003352_040--Hb_002259_160 Hb_012675_070 Hb_012675_070 Hb_003352_040--Hb_012675_070 Hb_001268_050 Hb_001268_050 Hb_003352_040--Hb_001268_050 Hb_001504_080 Hb_001504_080 Hb_003352_040--Hb_001504_080 Hb_082006_010 Hb_082006_010 Hb_000125_010--Hb_082006_010 Hb_001747_030 Hb_001747_030 Hb_000125_010--Hb_001747_030 Hb_002735_050 Hb_002735_050 Hb_000125_010--Hb_002735_050 Hb_000125_010--Hb_003352_040 Hb_000125_010--Hb_002259_160 Hb_000125_010--Hb_001268_050 Hb_002078_260 Hb_002078_260 Hb_000340_520--Hb_002078_260 Hb_000635_070 Hb_000635_070 Hb_000340_520--Hb_000635_070 Hb_000340_520--Hb_082006_010 Hb_000340_520--Hb_000125_010 Hb_000733_080 Hb_000733_080 Hb_000340_520--Hb_000733_080 Hb_030982_020 Hb_030982_020 Hb_000340_520--Hb_030982_020 Hb_025190_010 Hb_025190_010 Hb_003688_110--Hb_025190_010 Hb_002200_050 Hb_002200_050 Hb_003688_110--Hb_002200_050 Hb_007763_060 Hb_007763_060 Hb_003688_110--Hb_007763_060 Hb_003688_110--Hb_041205_010 Hb_004235_030 Hb_004235_030 Hb_003688_110--Hb_004235_030 Hb_005085_030 Hb_005085_030 Hb_003688_110--Hb_005085_030 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_041205_010--Hb_002259_160 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_041205_010--Hb_082006_010 Hb_041205_010--Hb_002078_260 Hb_000641_020 Hb_000641_020 Hb_041205_010--Hb_000641_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47825 0.342219 0.461073 4.9062 0.217804 3.75882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44071 1.45611 2.21777 1.66373 1.3855

CAGE analysis