Hb_000224_060

Information

Type -
Description -
Location Contig224: 40219-56085
Sequence    

Annotation

kegg
ID rcu:RCOM_0510870
description transcription initiation factor tfiid, putative
nr
ID XP_012080684.1
description PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
swissprot
ID Q9MAU3
description Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1
trembl
ID A0A067K3Z7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13785 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor tfiid subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23285: 48907-55925 , PASA_asmbl_23286: 49776-49977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_060 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
2 Hb_003878_140 0.0442491807 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
3 Hb_000291_190 0.0564174565 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
4 Hb_000865_080 0.0589510029 - - arsenite-resistance protein, putative [Ricinus communis]
5 Hb_000140_080 0.0632589004 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
6 Hb_000025_360 0.0735842814 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
7 Hb_001616_050 0.0738123536 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
8 Hb_000421_120 0.0750971768 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
9 Hb_023827_040 0.0767369802 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
10 Hb_003020_110 0.0776264202 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
11 Hb_011386_040 0.0787794811 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
12 Hb_001584_170 0.0809536886 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_000406_240 0.081079087 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
14 Hb_004162_280 0.0831011944 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
15 Hb_000032_320 0.0839058854 - - protein binding protein, putative [Ricinus communis]
16 Hb_002301_220 0.0843151872 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
17 Hb_032202_110 0.0851975121 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_004970_150 0.0861698808 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
19 Hb_000342_110 0.0881487654 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
20 Hb_000236_100 0.0885529331 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]

Gene co-expression network

sample Hb_000224_060 Hb_000224_060 Hb_003878_140 Hb_003878_140 Hb_000224_060--Hb_003878_140 Hb_000291_190 Hb_000291_190 Hb_000224_060--Hb_000291_190 Hb_000865_080 Hb_000865_080 Hb_000224_060--Hb_000865_080 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000025_360 Hb_000025_360 Hb_000224_060--Hb_000025_360 Hb_001616_050 Hb_001616_050 Hb_000224_060--Hb_001616_050 Hb_002977_010 Hb_002977_010 Hb_003878_140--Hb_002977_010 Hb_003878_140--Hb_001616_050 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_000291_190--Hb_000865_080 Hb_000291_190--Hb_000025_360 Hb_006586_050 Hb_006586_050 Hb_000291_190--Hb_006586_050 Hb_000291_190--Hb_003878_140 Hb_000291_190--Hb_001616_050 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000865_080--Hb_000025_360 Hb_033095_020 Hb_033095_020 Hb_000140_080--Hb_033095_020 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000261_220 Hb_000261_220 Hb_000140_080--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000140_080--Hb_031527_020 Hb_000152_340 Hb_000152_340 Hb_000140_080--Hb_000152_340 Hb_045793_010 Hb_045793_010 Hb_000025_360--Hb_045793_010 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_007229_040 Hb_007229_040 Hb_001616_050--Hb_007229_040 Hb_001946_300 Hb_001946_300 Hb_001616_050--Hb_001946_300 Hb_001616_050--Hb_002977_010 Hb_032202_240 Hb_032202_240 Hb_001616_050--Hb_032202_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.3687 33.7701 12.7067 9.17808 33.3769 36.3967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7616 20.398 17.9871 15.2377 6.42564

CAGE analysis