Hb_000224_170

Information

Type -
Description -
Location Contig224: 129387-133480
Sequence    

Annotation

kegg
ID rcu:RCOM_0511150
description Dual specificity protein phosphatase, putative (EC:3.1.3.16)
nr
ID KDP30834.1
description hypothetical protein JCGZ_13777 [Jatropha curcas]
swissprot
ID Q84JU4
description Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1
trembl
ID A0A067KG69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13777 PE=4 SV=1
Gene Ontology
ID GO:0004725
description protein-tyrosine-phosphatase ibr5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23305: 129387-133464 , PASA_asmbl_23306: 129642-132524 , PASA_asmbl_23307: 131071-131274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_170 0.0 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
2 Hb_001623_420 0.0627586148 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_031527_040 0.0717889742 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
4 Hb_000926_330 0.0720350916 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
5 Hb_000061_420 0.0738951823 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
6 Hb_181235_010 0.0739732555 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
7 Hb_003777_330 0.0749572667 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
8 Hb_001377_290 0.0764160822 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
9 Hb_006185_050 0.0768821707 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
10 Hb_000300_060 0.0826430182 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
11 Hb_010710_110 0.0829545575 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
12 Hb_000398_180 0.0833893989 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
13 Hb_000445_180 0.0839396697 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
14 Hb_000120_950 0.084077278 - - PREDICTED: protein GRIP [Jatropha curcas]
15 Hb_000155_190 0.0844482874 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001584_330 0.0844938356 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
17 Hb_006332_020 0.0849251111 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
18 Hb_002027_260 0.0851911697 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
19 Hb_012634_010 0.0859476018 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
20 Hb_002154_030 0.0860732905 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000224_170 Hb_000224_170 Hb_001623_420 Hb_001623_420 Hb_000224_170--Hb_001623_420 Hb_031527_040 Hb_031527_040 Hb_000224_170--Hb_031527_040 Hb_000926_330 Hb_000926_330 Hb_000224_170--Hb_000926_330 Hb_000061_420 Hb_000061_420 Hb_000224_170--Hb_000061_420 Hb_181235_010 Hb_181235_010 Hb_000224_170--Hb_181235_010 Hb_003777_330 Hb_003777_330 Hb_000224_170--Hb_003777_330 Hb_001584_330 Hb_001584_330 Hb_001623_420--Hb_001584_330 Hb_000120_950 Hb_000120_950 Hb_001623_420--Hb_000120_950 Hb_005306_110 Hb_005306_110 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_003376_350 Hb_003376_350 Hb_000926_330--Hb_003376_350 Hb_000926_330--Hb_031527_040 Hb_004907_110 Hb_004907_110 Hb_000926_330--Hb_004907_110 Hb_000926_330--Hb_000061_420 Hb_000181_070 Hb_000181_070 Hb_000926_330--Hb_000181_070 Hb_003680_200 Hb_003680_200 Hb_000061_420--Hb_003680_200 Hb_018790_060 Hb_018790_060 Hb_000061_420--Hb_018790_060 Hb_000291_110 Hb_000291_110 Hb_000061_420--Hb_000291_110 Hb_000061_420--Hb_181235_010 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_181235_010--Hb_003777_330 Hb_000062_240 Hb_000062_240 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_000406_220 Hb_000406_220 Hb_181235_010--Hb_000406_220 Hb_001720_050 Hb_001720_050 Hb_003777_330--Hb_001720_050 Hb_000923_020 Hb_000923_020 Hb_003777_330--Hb_000923_020 Hb_004195_160 Hb_004195_160 Hb_003777_330--Hb_004195_160 Hb_082609_020 Hb_082609_020 Hb_003777_330--Hb_082609_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.777 28.0477 12.2292 17.0991 45.4891 36.3763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4844 40.2803 43.4198 16.2636 10.3587

CAGE analysis