Hb_000226_080

Information

Type -
Description -
Location Contig226: 94415-98461
Sequence    

Annotation

kegg
ID rcu:RCOM_0003340
description prephenate dehydrogenase, putative
nr
ID XP_002530754.1
description prephenate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q944B6
description Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1
trembl
ID B9SXN5
description Prephenate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0003340 PE=4 SV=1
Gene Ontology
ID GO:0004665
description arogenate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23489: 94890-96320 , PASA_asmbl_23490: 96386-96522 , PASA_asmbl_23491: 96799-98123
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000226_080 0.0 - - prephenate dehydrogenase, putative [Ricinus communis]
2 Hb_004993_060 0.1296297437 - - -
3 Hb_024404_020 0.1311861229 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
4 Hb_000270_120 0.136438726 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
5 Hb_000549_040 0.1370179394 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
6 Hb_001619_040 0.1379644024 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
7 Hb_000239_020 0.1396686114 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
8 Hb_012573_040 0.139998628 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
9 Hb_007044_050 0.1436617045 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
10 Hb_031910_020 0.1463363115 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
11 Hb_025708_020 0.1473879976 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_066920_030 0.1478404578 - - PREDICTED: adagio protein 1 [Jatropha curcas]
13 Hb_012725_060 0.1481067027 - - protein binding protein, putative [Ricinus communis]
14 Hb_000152_320 0.1497932234 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005489_070 0.1498487982 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
16 Hb_001411_140 0.1518622969 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
17 Hb_007262_030 0.1557971027 - - -
18 Hb_024468_010 0.1558248397 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
19 Hb_001405_070 0.155990942 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
20 Hb_001723_100 0.1568632336 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000226_080 Hb_000226_080 Hb_004993_060 Hb_004993_060 Hb_000226_080--Hb_004993_060 Hb_024404_020 Hb_024404_020 Hb_000226_080--Hb_024404_020 Hb_000270_120 Hb_000270_120 Hb_000226_080--Hb_000270_120 Hb_000549_040 Hb_000549_040 Hb_000226_080--Hb_000549_040 Hb_001619_040 Hb_001619_040 Hb_000226_080--Hb_001619_040 Hb_000239_020 Hb_000239_020 Hb_000226_080--Hb_000239_020 Hb_031910_020 Hb_031910_020 Hb_004993_060--Hb_031910_020 Hb_004993_060--Hb_000549_040 Hb_007044_050 Hb_007044_050 Hb_004993_060--Hb_007044_050 Hb_000603_080 Hb_000603_080 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000152_320 Hb_000152_320 Hb_004993_060--Hb_000152_320 Hb_003037_020 Hb_003037_020 Hb_024404_020--Hb_003037_020 Hb_024404_020--Hb_000152_320 Hb_024404_020--Hb_000549_040 Hb_010368_060 Hb_010368_060 Hb_024404_020--Hb_010368_060 Hb_027472_070 Hb_027472_070 Hb_024404_020--Hb_027472_070 Hb_007904_130 Hb_007904_130 Hb_024404_020--Hb_007904_130 Hb_001541_070 Hb_001541_070 Hb_000270_120--Hb_001541_070 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_001723_100 Hb_001723_100 Hb_000270_120--Hb_001723_100 Hb_000086_630 Hb_000086_630 Hb_000270_120--Hb_000086_630 Hb_000656_390 Hb_000656_390 Hb_000270_120--Hb_000656_390 Hb_002542_110 Hb_002542_110 Hb_000270_120--Hb_002542_110 Hb_000549_040--Hb_031910_020 Hb_004117_260 Hb_004117_260 Hb_000549_040--Hb_004117_260 Hb_000367_260 Hb_000367_260 Hb_000549_040--Hb_000367_260 Hb_001314_070 Hb_001314_070 Hb_000549_040--Hb_001314_070 Hb_005228_070 Hb_005228_070 Hb_000549_040--Hb_005228_070 Hb_001619_040--Hb_000152_330 Hb_024468_010 Hb_024468_010 Hb_001619_040--Hb_024468_010 Hb_001117_130 Hb_001117_130 Hb_001619_040--Hb_001117_130 Hb_005356_040 Hb_005356_040 Hb_001619_040--Hb_005356_040 Hb_000649_150 Hb_000649_150 Hb_001619_040--Hb_000649_150 Hb_027393_030 Hb_027393_030 Hb_000239_020--Hb_027393_030 Hb_000239_020--Hb_000367_260 Hb_000239_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_000239_020--Hb_001504_330 Hb_000239_020--Hb_004993_060 Hb_005542_060 Hb_005542_060 Hb_000239_020--Hb_005542_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30996 7.52719 2.23978 3.99436 0.953887 2.24585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87291 3.15627 9.70836 4.63345 4.38594

CAGE analysis