Hb_000226_120

Information

Type -
Description -
Location Contig226: 144640-147649
Sequence    

Annotation

kegg
ID rcu:RCOM_0667040
description heparanase, putative
nr
ID XP_012081145.1
description PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9FZP1
description Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2
trembl
ID A0A067KEH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16996 PE=4 SV=1
Gene Ontology
ID GO:0009505
description heparanase-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23494: 144613-147517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000226_120 0.0 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
2 Hb_000236_230 0.1440728105 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
3 Hb_017358_080 0.1480250737 - - -
4 Hb_147745_010 0.1514405995 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
5 Hb_001366_110 0.1552356829 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000428_040 0.1638775902 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
7 Hb_000165_020 0.180861565 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
8 Hb_000130_350 0.1831801497 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_116701_010 0.195511108 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
10 Hb_008695_220 0.1961733837 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
11 Hb_143748_010 0.1964967681 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
12 Hb_000300_410 0.2048034006 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
13 Hb_158092_050 0.2057633928 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
14 Hb_001758_090 0.2081510926 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
15 Hb_000417_220 0.2099410717 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
16 Hb_000566_150 0.2124177496 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000705_270 0.213299664 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
18 Hb_004657_070 0.213836073 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
19 Hb_000094_200 0.2176998972 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000251_120 0.2194092195 - - O-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000226_120 Hb_000226_120 Hb_000236_230 Hb_000236_230 Hb_000226_120--Hb_000236_230 Hb_017358_080 Hb_017358_080 Hb_000226_120--Hb_017358_080 Hb_147745_010 Hb_147745_010 Hb_000226_120--Hb_147745_010 Hb_001366_110 Hb_001366_110 Hb_000226_120--Hb_001366_110 Hb_000428_040 Hb_000428_040 Hb_000226_120--Hb_000428_040 Hb_000165_020 Hb_000165_020 Hb_000226_120--Hb_000165_020 Hb_000236_230--Hb_000428_040 Hb_000236_230--Hb_001366_110 Hb_000251_120 Hb_000251_120 Hb_000236_230--Hb_000251_120 Hb_116701_010 Hb_116701_010 Hb_000236_230--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_000236_230--Hb_000130_350 Hb_005183_130 Hb_005183_130 Hb_000236_230--Hb_005183_130 Hb_017358_080--Hb_000428_040 Hb_017358_080--Hb_147745_010 Hb_000431_120 Hb_000431_120 Hb_017358_080--Hb_000431_120 Hb_017358_080--Hb_116701_010 Hb_168392_010 Hb_168392_010 Hb_017358_080--Hb_168392_010 Hb_147745_010--Hb_000165_020 Hb_147745_010--Hb_000236_230 Hb_150486_010 Hb_150486_010 Hb_147745_010--Hb_150486_010 Hb_147745_010--Hb_001366_110 Hb_000300_410 Hb_000300_410 Hb_147745_010--Hb_000300_410 Hb_158092_050 Hb_158092_050 Hb_001366_110--Hb_158092_050 Hb_001366_110--Hb_116701_010 Hb_001366_110--Hb_000130_350 Hb_000108_180 Hb_000108_180 Hb_001366_110--Hb_000108_180 Hb_001541_060 Hb_001541_060 Hb_001366_110--Hb_001541_060 Hb_004657_070 Hb_004657_070 Hb_000428_040--Hb_004657_070 Hb_000428_040--Hb_116701_010 Hb_000428_040--Hb_000130_350 Hb_008762_010 Hb_008762_010 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140 Hb_000165_020--Hb_150486_010 Hb_000165_020--Hb_000236_230 Hb_001214_040 Hb_001214_040 Hb_000165_020--Hb_001214_040 Hb_000165_020--Hb_001366_110 Hb_000165_020--Hb_116701_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.838336 2.8402 5.12171 116.145 0.272803 0.927711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4318 4.11288 11.2288 4.24582 70.326

CAGE analysis