Hb_000227_010

Information

Type -
Description -
Location Contig227: 11046-21665
Sequence    

Annotation

kegg
ID rcu:RCOM_0913010
description pepsin A, putative
nr
ID KDP40116.1
description hypothetical protein JCGZ_02114 [Jatropha curcas]
swissprot
ID Q8LAI1
description Probable aquaporin NIP7-1 OS=Arabidopsis thaliana GN=NIP7-1 PE=2 SV=2
trembl
ID A0A067KV73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02114 PE=3 SV=1
Gene Ontology
ID GO:0016021
description basic 7s globulin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23580: 11091-12572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_010 0.0 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
2 Hb_002585_050 0.0258495411 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000592_150 0.0258811451 - - Os05g0413200 [Oryza sativa Japonica Group]
4 Hb_004228_050 0.0260634799 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
5 Hb_002305_040 0.0277978657 - - TMV resistance protein N, putative [Ricinus communis]
6 Hb_075653_010 0.0282023433 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
7 Hb_007816_010 0.0282211643 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
8 Hb_000265_040 0.0301431013 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
9 Hb_001536_070 0.0302048887 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
10 Hb_107495_020 0.0306105359 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
11 Hb_002837_010 0.0306639991 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
12 Hb_006953_010 0.032249974 - - cytochrome P450, putative [Ricinus communis]
13 Hb_002049_040 0.0335666726 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
14 Hb_011846_020 0.0341050895 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
15 Hb_182291_010 0.0342741069 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
16 Hb_004598_010 0.0351038973 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
17 Hb_001372_010 0.035330072 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_002186_150 0.0353312592 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
19 Hb_046150_010 0.0353544732 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
20 Hb_004744_030 0.0374003393 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]

Gene co-expression network

sample Hb_000227_010 Hb_000227_010 Hb_002585_050 Hb_002585_050 Hb_000227_010--Hb_002585_050 Hb_000592_150 Hb_000592_150 Hb_000227_010--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_000227_010--Hb_004228_050 Hb_002305_040 Hb_002305_040 Hb_000227_010--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_000227_010--Hb_075653_010 Hb_007816_010 Hb_007816_010 Hb_000227_010--Hb_007816_010 Hb_002585_050--Hb_007816_010 Hb_002585_050--Hb_000592_150 Hb_002585_050--Hb_004228_050 Hb_002837_010 Hb_002837_010 Hb_002585_050--Hb_002837_010 Hb_002585_050--Hb_002305_040 Hb_002585_050--Hb_075653_010 Hb_000592_150--Hb_004228_050 Hb_000592_150--Hb_002305_040 Hb_000592_150--Hb_075653_010 Hb_000265_040 Hb_000265_040 Hb_000592_150--Hb_000265_040 Hb_001536_070 Hb_001536_070 Hb_000592_150--Hb_001536_070 Hb_004228_050--Hb_002305_040 Hb_004228_050--Hb_075653_010 Hb_004228_050--Hb_000265_040 Hb_004228_050--Hb_001536_070 Hb_002305_040--Hb_075653_010 Hb_002305_040--Hb_000265_040 Hb_002305_040--Hb_001536_070 Hb_107495_020 Hb_107495_020 Hb_002305_040--Hb_107495_020 Hb_075653_010--Hb_000265_040 Hb_075653_010--Hb_001536_070 Hb_075653_010--Hb_107495_020 Hb_007816_010--Hb_002837_010 Hb_011846_020 Hb_011846_020 Hb_007816_010--Hb_011846_020 Hb_002186_150 Hb_002186_150 Hb_007816_010--Hb_002186_150 Hb_046150_010 Hb_046150_010 Hb_007816_010--Hb_046150_010 Hb_004744_030 Hb_004744_030 Hb_007816_010--Hb_004744_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00904302 0 6.16893 0.796082 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis