Hb_000227_020

Information

Type -
Description -
Location Contig227: 14524-18849
Sequence    

Annotation

kegg
ID rcu:RCOM_0913020
description hypothetical protein
nr
ID XP_012069537.1
description PREDICTED: basic 7S globulin-like [Jatropha curcas]
swissprot
ID P13917
description Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2
trembl
ID A0A067L6J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02113 PE=4 SV=1
Gene Ontology
ID GO:0004190
description basic 7s globulin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23581: 14308-15902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_020 0.0 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
2 Hb_064396_010 0.057701167 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_162378_020 0.0782126023 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
4 Hb_002686_070 0.082922374 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011063_030 0.0881632413 - - protein with unknown function [Ricinus communis]
6 Hb_001235_040 0.0974813391 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
7 Hb_000032_080 0.1000059323 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
8 Hb_002874_010 0.1062509558 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
9 Hb_007044_260 0.1063101165 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
10 Hb_001220_020 0.1075613184 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
11 Hb_000035_190 0.1133383299 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001210_030 0.1139358628 - - PREDICTED: plectin [Jatropha curcas]
13 Hb_000358_010 0.1147843519 - - PREDICTED: basic blue protein [Populus euphratica]
14 Hb_119044_040 0.1151563628 - - cyclin B, putative [Ricinus communis]
15 Hb_003018_210 0.1177120536 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
16 Hb_004032_390 0.1192582533 - - CDK, putative [Ricinus communis]
17 Hb_005649_050 0.1201580452 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002374_090 0.1207205809 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
19 Hb_001699_070 0.1221190926 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003398_050 0.1223203531 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]

Gene co-expression network

sample Hb_000227_020 Hb_000227_020 Hb_064396_010 Hb_064396_010 Hb_000227_020--Hb_064396_010 Hb_162378_020 Hb_162378_020 Hb_000227_020--Hb_162378_020 Hb_002686_070 Hb_002686_070 Hb_000227_020--Hb_002686_070 Hb_011063_030 Hb_011063_030 Hb_000227_020--Hb_011063_030 Hb_001235_040 Hb_001235_040 Hb_000227_020--Hb_001235_040 Hb_000032_080 Hb_000032_080 Hb_000227_020--Hb_000032_080 Hb_064396_010--Hb_162378_020 Hb_064396_010--Hb_002686_070 Hb_001220_020 Hb_001220_020 Hb_064396_010--Hb_001220_020 Hb_064396_010--Hb_000032_080 Hb_064396_010--Hb_011063_030 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_011063_030 Hb_162378_020--Hb_000032_080 Hb_004032_390 Hb_004032_390 Hb_162378_020--Hb_004032_390 Hb_162378_020--Hb_002686_070 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_002686_070--Hb_001220_020 Hb_002686_070--Hb_000032_080 Hb_011063_030--Hb_001235_040 Hb_011063_030--Hb_000032_080 Hb_011063_030--Hb_001220_020 Hb_006788_130 Hb_006788_130 Hb_001235_040--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_001235_040--Hb_000084_230 Hb_001235_040--Hb_162378_020 Hb_001235_040--Hb_001220_020 Hb_001564_100 Hb_001564_100 Hb_001235_040--Hb_001564_100 Hb_000032_080--Hb_001220_020 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.332575 13.0833 3.16821 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0268127 1.36878 0.179374

CAGE analysis