Hb_000227_050

Information

Type -
Description -
Location Contig227: 41514-42320
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23587: 42857-45992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_050 0.0 - - -
2 Hb_033222_010 0.2136457421 - - PREDICTED: uncharacterized protein LOC105173350 [Sesamum indicum]
3 Hb_000066_160 0.2351212837 - - -
4 Hb_002636_150 0.240584241 - - -
5 Hb_002200_050 0.2520648248 - - unknown [Lotus japonicus]
6 Hb_000160_160 0.2549777877 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
7 Hb_000028_210 0.2769608142 - - hypothetical protein CISIN_1g0103302mg, partial [Citrus sinensis]
8 Hb_010565_040 0.2809896765 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
9 Hb_000181_150 0.2890050564 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
10 Hb_080104_010 0.3017935684 - - unnamed protein product [Vitis vinifera]
11 Hb_032258_020 0.3051701774 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
12 Hb_125431_010 0.3057953459 - - -
13 Hb_025190_010 0.3072564208 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008447_030 0.3120499666 - - -
15 Hb_003688_110 0.3123612842 - - -
16 Hb_000661_070 0.3163331072 - - -
17 Hb_000656_090 0.3217423592 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
18 Hb_013818_050 0.3271984793 - - PREDICTED: uncharacterized protein LOC105629143 isoform X2 [Jatropha curcas]
19 Hb_005048_040 0.3272239112 - - PREDICTED: endonuclease 1 [Jatropha curcas]
20 Hb_002815_050 0.3274343383 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_000227_050 Hb_000227_050 Hb_033222_010 Hb_033222_010 Hb_000227_050--Hb_033222_010 Hb_000066_160 Hb_000066_160 Hb_000227_050--Hb_000066_160 Hb_002636_150 Hb_002636_150 Hb_000227_050--Hb_002636_150 Hb_002200_050 Hb_002200_050 Hb_000227_050--Hb_002200_050 Hb_000160_160 Hb_000160_160 Hb_000227_050--Hb_000160_160 Hb_000028_210 Hb_000028_210 Hb_000227_050--Hb_000028_210 Hb_012218_020 Hb_012218_020 Hb_033222_010--Hb_012218_020 Hb_033222_010--Hb_000028_210 Hb_000002_420 Hb_000002_420 Hb_033222_010--Hb_000002_420 Hb_001723_050 Hb_001723_050 Hb_033222_010--Hb_001723_050 Hb_033222_010--Hb_000160_160 Hb_080104_010 Hb_080104_010 Hb_000066_160--Hb_080104_010 Hb_133702_040 Hb_133702_040 Hb_000066_160--Hb_133702_040 Hb_003918_020 Hb_003918_020 Hb_000066_160--Hb_003918_020 Hb_011644_010 Hb_011644_010 Hb_000066_160--Hb_011644_010 Hb_000661_070 Hb_000661_070 Hb_000066_160--Hb_000661_070 Hb_002815_050 Hb_002815_050 Hb_002636_150--Hb_002815_050 Hb_032258_020 Hb_032258_020 Hb_002636_150--Hb_032258_020 Hb_007188_030 Hb_007188_030 Hb_002636_150--Hb_007188_030 Hb_002636_150--Hb_002200_050 Hb_003029_100 Hb_003029_100 Hb_002636_150--Hb_003029_100 Hb_005679_070 Hb_005679_070 Hb_002636_150--Hb_005679_070 Hb_002200_050--Hb_000160_160 Hb_003688_110 Hb_003688_110 Hb_002200_050--Hb_003688_110 Hb_025190_010 Hb_025190_010 Hb_002200_050--Hb_025190_010 Hb_008447_030 Hb_008447_030 Hb_002200_050--Hb_008447_030 Hb_025288_010 Hb_025288_010 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020 Hb_000656_090 Hb_000656_090 Hb_000160_160--Hb_000656_090 Hb_012627_020 Hb_012627_020 Hb_000160_160--Hb_012627_020 Hb_000160_160--Hb_008447_030 Hb_000329_560 Hb_000329_560 Hb_000160_160--Hb_000329_560 Hb_000160_160--Hb_025190_010 Hb_002783_060 Hb_002783_060 Hb_000028_210--Hb_002783_060 Hb_000810_020 Hb_000810_020 Hb_000028_210--Hb_000810_020 Hb_007763_050 Hb_007763_050 Hb_000028_210--Hb_007763_050 Hb_007124_010 Hb_007124_010 Hb_000028_210--Hb_007124_010 Hb_177103_010 Hb_177103_010 Hb_000028_210--Hb_177103_010 Hb_000161_120 Hb_000161_120 Hb_000028_210--Hb_000161_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.03467 0 4.27921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64009 0.694414 0 1.29491 2.0642

CAGE analysis