Hb_000227_080

Information

Type -
Description -
Location Contig227: 46184-47442
Sequence    

Annotation

kegg
ID rcu:RCOM_0913500
description hypothetical protein
nr
ID XP_002517182.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RTW3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0913500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23588: 46201-47448
cDNA
(Sanger)
(ID:Location)		 006_F09.ab1: 46201-47350

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_058999_020 0.0562138545 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
3 Hb_000215_110 0.0620683014 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
4 Hb_003525_010 0.0670383692 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
5 Hb_002182_080 0.0676106076 - - 3-5 exonuclease, putative [Ricinus communis]
6 Hb_000317_240 0.0711372893 - - PREDICTED: protein DYAD [Jatropha curcas]
7 Hb_003416_010 0.0727166079 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
8 Hb_000465_460 0.0728803164 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
9 Hb_000092_170 0.0734568095 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
10 Hb_000120_790 0.0740928114 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
11 Hb_002701_020 0.0747797661 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
12 Hb_002863_050 0.0757330073 - - aldose 1-epimerase, putative [Ricinus communis]
13 Hb_000093_160 0.0761654421 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
14 Hb_019280_040 0.0763748293 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001142_030 0.0766625183 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
16 Hb_001279_150 0.0775825624 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
17 Hb_002044_080 0.0775921109 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
18 Hb_000373_070 0.0779081886 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
19 Hb_001828_190 0.0787386611 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
20 Hb_002530_030 0.0788667684 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_080 Hb_000227_080 Hb_058999_020 Hb_058999_020 Hb_000227_080--Hb_058999_020 Hb_000215_110 Hb_000215_110 Hb_000227_080--Hb_000215_110 Hb_003525_010 Hb_003525_010 Hb_000227_080--Hb_003525_010 Hb_002182_080 Hb_002182_080 Hb_000227_080--Hb_002182_080 Hb_000317_240 Hb_000317_240 Hb_000227_080--Hb_000317_240 Hb_003416_010 Hb_003416_010 Hb_000227_080--Hb_003416_010 Hb_000757_060 Hb_000757_060 Hb_058999_020--Hb_000757_060 Hb_005779_060 Hb_005779_060 Hb_058999_020--Hb_005779_060 Hb_058999_020--Hb_000215_110 Hb_000465_460 Hb_000465_460 Hb_058999_020--Hb_000465_460 Hb_002044_080 Hb_002044_080 Hb_058999_020--Hb_002044_080 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_003525_010--Hb_000215_110 Hb_002182_080--Hb_001279_150 Hb_002835_080 Hb_002835_080 Hb_002182_080--Hb_002835_080 Hb_002182_080--Hb_000215_110 Hb_019280_040 Hb_019280_040 Hb_002182_080--Hb_019280_040 Hb_008092_040 Hb_008092_040 Hb_002182_080--Hb_008092_040 Hb_003108_020 Hb_003108_020 Hb_002182_080--Hb_003108_020 Hb_002530_030 Hb_002530_030 Hb_000317_240--Hb_002530_030 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000317_240--Hb_000465_460 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140 Hb_008847_030 Hb_008847_030 Hb_003416_010--Hb_008847_030 Hb_002641_060 Hb_002641_060 Hb_003416_010--Hb_002641_060 Hb_005496_140 Hb_005496_140 Hb_003416_010--Hb_005496_140 Hb_002863_050 Hb_002863_050 Hb_003416_010--Hb_002863_050 Hb_003938_090 Hb_003938_090 Hb_003416_010--Hb_003938_090 Hb_001142_030 Hb_001142_030 Hb_003416_010--Hb_001142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5773 8.51883 10.8615 11.8033 14.518 19.4196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2255 25.1802 15.0498 12.242 10.122

CAGE analysis