Hb_000227_090

Information

Type -
Description -
Location Contig227: 53169-60619
Sequence    

Annotation

kegg
ID rcu:RCOM_0913520
description ubiquitin-activating enzyme E1c, putative
nr
ID XP_012069550.1
description PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
swissprot
ID O65041
description NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2
trembl
ID A0A067KVE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02120 PE=4 SV=1
Gene Ontology
ID GO:0005524
description nedd8-activating enzyme e1 catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23592: 53455-55784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_090 0.0 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
2 Hb_000130_410 0.0760340185 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
3 Hb_000120_170 0.0773257588 - - selenoprotein [Populus trichocarpa]
4 Hb_001541_230 0.0852773093 - - unnamed protein product [Vitis vinifera]
5 Hb_000000_270 0.0885281633 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
6 Hb_002217_510 0.0905275397 - - conserved hypothetical protein [Ricinus communis]
7 Hb_154114_010 0.0906427101 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
8 Hb_007035_050 0.0917976658 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
9 Hb_000886_050 0.0924351848 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
10 Hb_011249_010 0.0933180871 - - PREDICTED: N-alpha-acetyltransferase 35, NatC auxiliary subunit isoform X1 [Jatropha curcas]
11 Hb_028285_010 0.0939542295 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
12 Hb_000221_250 0.0948092727 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
13 Hb_007765_110 0.0960968983 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
14 Hb_000574_540 0.0967303648 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000366_120 0.0985947383 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
16 Hb_000020_150 0.0986550569 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
17 Hb_003120_080 0.0989654836 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
18 Hb_002739_020 0.0991914332 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
19 Hb_001396_200 0.0991939246 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
20 Hb_014497_050 0.0995151635 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_090 Hb_000227_090 Hb_000130_410 Hb_000130_410 Hb_000227_090--Hb_000130_410 Hb_000120_170 Hb_000120_170 Hb_000227_090--Hb_000120_170 Hb_001541_230 Hb_001541_230 Hb_000227_090--Hb_001541_230 Hb_000000_270 Hb_000000_270 Hb_000227_090--Hb_000000_270 Hb_002217_510 Hb_002217_510 Hb_000227_090--Hb_002217_510 Hb_154114_010 Hb_154114_010 Hb_000227_090--Hb_154114_010 Hb_000318_250 Hb_000318_250 Hb_000130_410--Hb_000318_250 Hb_002026_210 Hb_002026_210 Hb_000130_410--Hb_002026_210 Hb_001396_200 Hb_001396_200 Hb_000130_410--Hb_001396_200 Hb_000708_030 Hb_000708_030 Hb_000130_410--Hb_000708_030 Hb_004324_130 Hb_004324_130 Hb_000130_410--Hb_004324_130 Hb_001546_080 Hb_001546_080 Hb_000130_410--Hb_001546_080 Hb_003549_150 Hb_003549_150 Hb_000120_170--Hb_003549_150 Hb_013738_020 Hb_013738_020 Hb_000120_170--Hb_013738_020 Hb_000076_160 Hb_000076_160 Hb_000120_170--Hb_000076_160 Hb_000928_220 Hb_000928_220 Hb_000120_170--Hb_000928_220 Hb_000009_400 Hb_000009_400 Hb_000120_170--Hb_000009_400 Hb_030385_010 Hb_030385_010 Hb_001541_230--Hb_030385_010 Hb_001541_230--Hb_000000_270 Hb_006816_050 Hb_006816_050 Hb_001541_230--Hb_006816_050 Hb_005503_040 Hb_005503_040 Hb_001541_230--Hb_005503_040 Hb_000011_190 Hb_000011_190 Hb_001541_230--Hb_000011_190 Hb_000366_120 Hb_000366_120 Hb_000000_270--Hb_000366_120 Hb_000982_060 Hb_000982_060 Hb_000000_270--Hb_000982_060 Hb_000562_090 Hb_000562_090 Hb_000000_270--Hb_000562_090 Hb_028962_020 Hb_028962_020 Hb_000000_270--Hb_028962_020 Hb_000886_050 Hb_000886_050 Hb_000000_270--Hb_000886_050 Hb_000111_210 Hb_000111_210 Hb_002217_510--Hb_000111_210 Hb_007423_040 Hb_007423_040 Hb_002217_510--Hb_007423_040 Hb_011909_120 Hb_011909_120 Hb_002217_510--Hb_011909_120 Hb_008103_070 Hb_008103_070 Hb_002217_510--Hb_008103_070 Hb_000563_230 Hb_000563_230 Hb_002217_510--Hb_000563_230 Hb_000594_040 Hb_000594_040 Hb_154114_010--Hb_000594_040 Hb_004128_050 Hb_004128_050 Hb_154114_010--Hb_004128_050 Hb_002876_130 Hb_002876_130 Hb_154114_010--Hb_002876_130 Hb_000291_060 Hb_000291_060 Hb_154114_010--Hb_000291_060 Hb_002835_230 Hb_002835_230 Hb_154114_010--Hb_002835_230 Hb_000289_040 Hb_000289_040 Hb_154114_010--Hb_000289_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51793 5.44471 3.44724 3.88153 5.2193 3.85225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.07996 3.61756 2.21447 3.95288 2.57551

CAGE analysis